| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2139 |
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| Symbol | mfd |
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| ID | 3519051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2237155 |
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| End bp | 2240778 |
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| Gene Length | 3624 bp |
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| Protein Length | 1207 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637284596 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_268864 |
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| Protein GI | 71278327 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.84833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAG CAAGCAGCCT GTTAACCCCG GTATTGGCCA AGCGCCGAGG TAAAAATCCC
GATAAGAAGA GTTGGCATAA TTTACATGGC AGCAGCAGTA GCTTTGCTCT TTATCAAGCA
GCAAAAACAG CGCAAACGCC TATATTATTG ATAACAAGTA ATACTCCTCA AGCGCTTAAA
ATTGAGCAAG AGTTACTAAG TTTAGCTAAG AGCGATAGCC AAAATAAGGC TAATATCTGC
TTATTTCCTG ACTGGGAAAC ACTACCGTAC GATAATTTTT CACCTCACCA AGATATTATC
TCTCAGCGTC TTGCTACCTT GTACCAATTA TCACGTATGG AGTCTGGCAT AATTATTGTG
CCGGTAACCA CTCTAGTACA AAAGCTTGCT CCTAAACAAT ATATTGAAGC GAACAGCTTA
ATAATAAAAC AAGGCGATAA GAGAGATTTA CATCAAATGC GACAAGCCCT GGAAGCAAGT
GGCTATCGTA ATGTTGATCA AGTATTAGAG CATGGAGAGT TTTCTGCTCG AGGCGCTATT
TTAGATCTTT TCCCTATGGG AAGTAATAAG CCATTTCGTT TAGATTTCTT TGATGATGAA
ATTGATGAAA TTAGACTCTT TGATCCAGAA AGTCAGCGTT CAAAAGAGAA GATTGATGAA
ATTAATTTAT TGCCCGCGCA CGAGTTCCCC ATCGATGAAG CGGGTATCAG CTTATTTCGT
AGTCAATTTC GTGAACAATT TCAGGGCAAT ATTCATAAAG AGTCTGTTTA TCACAAAGTC
AGTAATGGCA TTTTGCCGCC TGGCATCGAG TATTACCTAC CACTGTTTTT TGATAATAAA
CAGGACACTG AAAAAGAAGG TGCAACCTTA AGTAATACTC TTTGTGATTA TTTAACTGAT
AATACTCTGG TCGTTATTAG CGGAGATATT GAGCACTCTT TAACGCAATA CTGGCTCGAT
ATAGAGTACC GTTATGAAAA TAGACGTTAC GACCCTACTC GGCCTTTATT ACCGCCAGAA
CAGCTATTTT TAACCGCTGA TACGCTTTAT AGCGCGTTAA AACCTTTTGA TCGCATCACC
ATTGCTAAGC AAACGAAAAT AGAGACGATT AAAACTCAAC GTAGTGACAA TCAGGCTAGC
GAAGACCTTG TTACTGCTGA AGTCGATGCT GAGACAAGTG CTGAAGTAAA AAGCAAAAGT
AGCGAAATAT GTTTTGATGT TAAACCGCTG CCTGATTTAA CGATTAATCA TAAACTGAAG
CAGCCGTTCG AATTAATCAA CCAATTCATC GCCAGTAAAG AGACGCCCAA CAAAGTGCTT
TTTGTTGCGC AAAGCCAAGG TCGCCGAGAA AGTGTGCTTG AGTTACTTGA GCGTGACAAT
ATTAGACCTG CTCAGTTTGA TAACATTGAC GACTTTATTA ACGCAACGGA TACCCTTGGT
ATTACCGTTA ATAGTTTAAC TCAGGGTTTT GCCTTCCAAG CGAAAGGTAA TAGTCAGAAA
AATGCGATTG CCCTAGTTAC TGAAGCCGAG TTATTAGGCG ATCATGTATC TCAAGCTAGA
AGACGTACCA AAGCGCAAGA TTTACAAGCT GATGCGTTAT TTAAAAACCT TGCTGAGTTA
ACCATTGGCC AACCTGTGGT CCATATTGAA CATGGCATTG GCCGATATTT AGGTCTACAG
ACCATTGAAA ATGGCGGCAT AGTTACCGAA TTTCTGGTGC TTAGTTATGC TAACGAAGCC
AAACTTTATG TCCCTGTTAG CTCTTTACAC TTAATTGGTA GATATTCAGG TGCTGATAGT
GACCATGCGC CACTGCATAA GCTAGGTAAT GATACTTGGA GTAAAGCTAA GCAGAAAGCA
GCAGAGAAAG TCCGTGACGT TGCCGCCGAA TTACTCGATA TTTACGCAAA ACGTGCCAGC
AACCATGGTT ATAGTTTTAA ACGTGATAAA CAAGACTACC AAGCTTTTAG TGACAGTTTT
GGTTTTGAAG AAACCTTCGA CCAAAAACAA GCCATTAATG CCGTAGTAAG CGATATGTTG
TCGCCAAAAA CCATGGACAG GCTTGTGTGT GGTGATGTTG GTTTTGGTAA AACAGAAGTC
GCTATGCGTG CAGCCTTTGT GGCAGTTAAT GATGGTAAAC AAGTCGCAAT ACTTGTCCCC
ACCACATTAC TCGCTCAACA ACATTATGAA AACTTTAGAG ATAGATTTGC TAATTGGCCG
GTAGTCACTG AAGTATTATC ACGGTTTAAA ACACCTAAAG AACAAAAAGA AGTGATTGCG
AGAGTTGAGT CTGGTCAAGT CGACATTCTA ATCGGTACCC ATAAATTACT TCAAAACAGC
ATTAAATATA AAGATTTAGG GTTACTGGTA GTCGATGAAG AACATCGATT TGGTGTTAAA
CAAAAAGAAA AAATCAAACA GCTACGCAGT AACGTTGATA TTTTAACACT AACGGCAACC
CCTATTCCTC GTACCTTAAA TATGGCCATG GGTGGAATGC GTGACTTGTC TATTATTGCC
ACGCCACCCG CTAAACGTTT AGCGGTAAAA ACCTTTGTAC GAGAACACGA TGAAGCATTA
ATTCGGGAAG CTGTATTACG TGAAACCTCA CGCGGTGGTC AGGTGTATTA TCTGCATAAC
CATGTTGATA CTATTGATAA AACTGCAGCA GACATCCAAA AATTAGTGCC TGAGGCTCGT
GTCGTCACGG CCCATGGACA AATGCGTGAG CGTGAGCTTG AACGCATCAT GAGTGATTTT
TATCATCAAC GCTTTAACGT CATTGTTTGT ACCACAATTA TTGAAACGGG TATCGATGTA
CCCAGTGCCA ATACCATCAT TATGGACAGA GCAGATCATC TTGGTTTAGC ACAATTACAC
CAACTGCGTG GCCGTGTAGG TCGCTCGCAT CATCAAGCTT ATGCCTATCT GTTAACGCCG
CATGAAAAAC GCATTACTAA AGATGCTAAA AAACGCTTAG AGGCTATCGC CTCTCTGGAA
GATTTAGGCG CAGGTTTTAC TTTAGCAACT CACGATTTAG AAATTCGTGG CGCGGGTGAG
TTATTAGGTG AAGACCAGAG TGGCTCAATG TGCCAAGTTG GCTTTAGTTT GTATATGGAA
ATGCTCGATC AAGCCGTTGC AGCACTTAAA GAAGGTAAAC AACTATCATT AGACCAAGTA
ATGTCTACGC AGACTGAGAT TGAGTTACGT GTACCAGCGC TGCTACCTGA TGATTACATT
TTTGACGTTA GCTTACGTTT AAGTTTATAT AAACGTATTG CTAGCTGTAA AAACAAAAAT
GAGCTAGATG ATATTCAAGT TGAGCTCATT GACCGTTTTG GTTTATTGCC TCAACCAAGT
AAAAATTTAG TCCAAATTGC CAAGCTACGC CTTAAAGCGC AGACTATTGG TATTTCGCGA
ATTGAGGCGA GTGCCACAGG TGGCTCGATT GAATTTAGTA ATGATACCAG CGTTGACCCT
ATGCTAATTA TTGGTTTAAT TCAAAAAAAT CCAGCAGTGT ATAGCATGGC TGGAGCAAGC
AAATTGAAGT TTGTAAAAGC CAACGATGAT ACTCAAAAAC GCTTTACCTT AATTTCTAAT
ATCTTAAATG ACTTAGCTAA ATAA
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| Protein sequence | MSKASSLLTP VLAKRRGKNP DKKSWHNLHG SSSSFALYQA AKTAQTPILL ITSNTPQALK
IEQELLSLAK SDSQNKANIC LFPDWETLPY DNFSPHQDII SQRLATLYQL SRMESGIIIV
PVTTLVQKLA PKQYIEANSL IIKQGDKRDL HQMRQALEAS GYRNVDQVLE HGEFSARGAI
LDLFPMGSNK PFRLDFFDDE IDEIRLFDPE SQRSKEKIDE INLLPAHEFP IDEAGISLFR
SQFREQFQGN IHKESVYHKV SNGILPPGIE YYLPLFFDNK QDTEKEGATL SNTLCDYLTD
NTLVVISGDI EHSLTQYWLD IEYRYENRRY DPTRPLLPPE QLFLTADTLY SALKPFDRIT
IAKQTKIETI KTQRSDNQAS EDLVTAEVDA ETSAEVKSKS SEICFDVKPL PDLTINHKLK
QPFELINQFI ASKETPNKVL FVAQSQGRRE SVLELLERDN IRPAQFDNID DFINATDTLG
ITVNSLTQGF AFQAKGNSQK NAIALVTEAE LLGDHVSQAR RRTKAQDLQA DALFKNLAEL
TIGQPVVHIE HGIGRYLGLQ TIENGGIVTE FLVLSYANEA KLYVPVSSLH LIGRYSGADS
DHAPLHKLGN DTWSKAKQKA AEKVRDVAAE LLDIYAKRAS NHGYSFKRDK QDYQAFSDSF
GFEETFDQKQ AINAVVSDML SPKTMDRLVC GDVGFGKTEV AMRAAFVAVN DGKQVAILVP
TTLLAQQHYE NFRDRFANWP VVTEVLSRFK TPKEQKEVIA RVESGQVDIL IGTHKLLQNS
IKYKDLGLLV VDEEHRFGVK QKEKIKQLRS NVDILTLTAT PIPRTLNMAM GGMRDLSIIA
TPPAKRLAVK TFVREHDEAL IREAVLRETS RGGQVYYLHN HVDTIDKTAA DIQKLVPEAR
VVTAHGQMRE RELERIMSDF YHQRFNVIVC TTIIETGIDV PSANTIIMDR ADHLGLAQLH
QLRGRVGRSH HQAYAYLLTP HEKRITKDAK KRLEAIASLE DLGAGFTLAT HDLEIRGAGE
LLGEDQSGSM CQVGFSLYME MLDQAVAALK EGKQLSLDQV MSTQTEIELR VPALLPDDYI
FDVSLRLSLY KRIASCKNKN ELDDIQVELI DRFGLLPQPS KNLVQIAKLR LKAQTIGISR
IEASATGGSI EFSNDTSVDP MLIIGLIQKN PAVYSMAGAS KLKFVKANDD TQKRFTLISN
ILNDLAK
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