Gene CPS_2125 details

Gene Information

• Locus tag: CPS_2125
• Symbol: msbA
• ID: 3519482
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 2218616
• End bp: 2220424
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637284583
• Product: lipid ABC transporter, ATP-binding/permease protein MsbA
• Protein accession: YP_268851
• Protein GI: 71278173
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.0153506
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATCAT CTCCAAAAAC GAACGCCTTA TCTTCTTCCG ACTCAGCCAA TGCAACCACA 
TGGCAAAACT TTAAACGACT GGTTAGTTAT GCGAAACCTT ATAAGCTCGG CTTTGTCGCC 
GCAATCATTG GTATGCTTGG TTATGCAGCT ATCGATGTAT ATTTTCTATC ACAGTTAAAA 
CCGCTTGTTG ATGAAGGTCT CTCTGGGGCT AATGCTAACT TTATGAAGTG GGCGCCATTG 
TTTATTATTG TGGCCTTTAC TGTTCGCGGT ATAGCTCACT TTATTGCTAA TTATTGCCTA 
GCTTGGGTCG GCAATAATGT CGTTGCTGAT TTAAGACAAA AACTTTTTGA ACATATCATG 
TCAATGCCCG TGGCTTTTCA TGATCAAACA TCTACCGGTT CACTTATTTC AAAAATAACC 
TTTGATACCG AGCAAGTATT AAATTCGGTG AGTAAATCTA TTTTAACCAT AGTGCAGCAA 
AGCGCCTTTA TTATTGGTTT ACTTGGGTTG ATGTTTTATT ACAGCTGGCA GTTATCATTA 
ATCTTTCTAT TGATCACGCC TATTATTGCT GTGATTGTCA GTGTGGTATC AAAGCGCTTT 
AGAAAAGTGA GTAAAAATAT TCAAGGGGCG ATGGGAGAGG TTACCACAGC GGCAGAACAA 
ACCTTTAATG GCCACAAAGT GGTATTAACG TTTGGTGGTC AACAACGAGA GTTCTCACGT 
TTTGCCAAAA TAAATAAACA TAACCGTCAG CAGCGCATGA AAATGCGGGC AACAAAATCA 
GCCAGCGTAC CCATTATTCA AGTAATAGCC TCATTTGCTT TAGCTTTTGT TTTCTATGCC 
ATTACTTCAG ATAGTTTACG CGACAGTATC TCTCCAGGTA CTTTTGTCAG TATTATCACG 
TATATGACCA TGTTGCTAAG ACCTCTGAAA ATGCTAACTA ATGTCAATAG TGAATTTCAA 
CAAGGCATGG CGGCTTGCAC CAGTATCTTT TCGATACTCG ATCATGAAAA AGAAAAAGAT 
AATGGTGACA AACAACTTGA AAGAGCTTCA GGAACTTTGT CCTTCAAACA TGTTGATTTT 
TCTTATAAAA ACACCAACAC CATGACAACA AGCGATAAAG AACAAGACAC TAAACTTGCG 
TTAAACGATA TTACTTTTGA CTTAGCGCCT GGTGAAACCT TAGCGTTAGT TGGACGTTCA 
GGCAGCGGTA AATCAACGGC CAGTTCATTA TTATTACGCT TTTATGATGC CACACGCGGT 
GAGATATTAA TTGATGATAC TAATATCGAA CAATTTCAGT TAAAAGATTT ACGTAAACAG 
TTTTCTTATG TATCTCAACA AGTCGTATTG TTTAATGATA CTTTAGCCAA TAATATTGCT 
TATGGTAAAC CTGAAGCGAC TGAAGCTGAA ATTATCGAAG CAGCTAAAAG TGCGCATGTG 
ATGGAGTTTG CAGAACACAT GGAGCAAGGG CTTGAAACTA ATATTGGTGA AAACGGTGCT 
TTACTTTCAG GCGGTCAACG TCAACGTGTC GCTATTGCGC GCGCTTTATT GTGTGATACG 
CCATTCTTAA TTTTAGATGA AGCAACCAGT GCGTTAGATA CAGAGTCGGA ACGTCATATT 
CAAGATGCGC TACAAACATT ACAGCAAAAT CGTACTTCAA TTGTTATTGC CCATCGATTA 
TCGACTATTG AAAATGCAGA CAAAATAATA GTTATGGAGC AAGGTAAAAT TGTCGAGCAA 
GGTAACCACC AAAGTTTACT TGCCAAACAA GGTGCTTATG CCCAGTTGCA TAGTTTCCAA 
TTTGAATAA 

 

Protein sequence

MASSPKTNAL SSSDSANATT WQNFKRLVSY AKPYKLGFVA AIIGMLGYAA IDVYFLSQLK 
PLVDEGLSGA NANFMKWAPL FIIVAFTVRG IAHFIANYCL AWVGNNVVAD LRQKLFEHIM 
SMPVAFHDQT STGSLISKIT FDTEQVLNSV SKSILTIVQQ SAFIIGLLGL MFYYSWQLSL 
IFLLITPIIA VIVSVVSKRF RKVSKNIQGA MGEVTTAAEQ TFNGHKVVLT FGGQQREFSR 
FAKINKHNRQ QRMKMRATKS ASVPIIQVIA SFALAFVFYA ITSDSLRDSI SPGTFVSIIT 
YMTMLLRPLK MLTNVNSEFQ QGMAACTSIF SILDHEKEKD NGDKQLERAS GTLSFKHVDF 
SYKNTNTMTT SDKEQDTKLA LNDITFDLAP GETLALVGRS GSGKSTASSL LLRFYDATRG 
EILIDDTNIE QFQLKDLRKQ FSYVSQQVVL FNDTLANNIA YGKPEATEAE IIEAAKSAHV 
MEFAEHMEQG LETNIGENGA LLSGGQRQRV AIARALLCDT PFLILDEATS ALDTESERHI 
QDALQTLQQN RTSIVIAHRL STIENADKII VMEQGKIVEQ GNHQSLLAKQ GAYAQLHSFQ 
FE