Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2088 |
Symbol | |
ID | 3518928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 2169854 |
End bp | 2172148 |
Gene Length | 2295 bp |
Protein Length | 764 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637284547 |
Product | TonB-dependent receptor |
Protein accession | YP_268815 |
Protein GI | 71278477 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.976356 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACA ATACAATAAA GCTTTCATTG CTTAGCGCTG CGGTATTAGT GGCGTTGCAA TCTCAAAGTG CCTTCGCACA AGAAGAAGTT GTAGAACAAG AAGAAGTTGT AGAGCAAGTA AAAAAGAAGC AAAAAGTAGA AACAATCACG ATAACATCGC AAAAAAGAAT CGAGCGGTTA ATTGATGTGC CTATTTCTGT TACCAATGTT GGTCATGAAG AGCTAAAACA ACGTGGTGTT AAAAAACTTC AAGACGTTAG TGAAATAGCG CCTAATATCA GCATGACCGG CGGAAAAAAC TTTAACGCAA AAATCACAAT TCGTGGTGTT GGTGCTAATA GTAGAAACAT CGGTTTCGAC AGCCGTGTTG GTGTTTATAT TGATGGCGTT TATTTAGGTC AATCACCAGC AGTTAACCAA GGCTTGGTTG ATTTAGAACG CGTTGAAGTA TTACGTGGTC CTCAGGGAAC ATTATTTGGT AAAAATACCA TTGCTGGCGC CATTAACTTG ATTTCTCAAG AGCCTACCGA TGAATTTGAA GGCTCTGTCA ATATTAATGC AGGCAGCAAT AATCTACGTG AATATAACCT GAAATTGAAT CTGCCGCTTA GTGATACAAC CGCAGCCAAA GTATTCTTAA ATAAGTCAGA AGAAGACGGC TATATGAAGA ATACTTACCT TAATACTAAG CCAGGCGGAC AAGACAGCTT AGCTGGTCGC GTTAACCTTA TTTCTGAATT ATCAGATAAC TTACGGTTAA GTTTCAGTGG CGATTACTCA AAACAAGACC TTACAGCTTT TTCAGACATG GGCATGACAC CTATCTTTGG TGGTACAGGT CACCCTTTTG ATGGCATGCT TGAAGCTATT TATGGCGATG TGTTAGGTGG TACGGCAGAT AGTAAGTATG AAAATTATCA AGATAGAGAT GTTTTTGAAG ACATCACCAT TTGGGGGAGC TCGTTAACCT TAGATTATGA TATGGATAAT GACTTTGCAT TTAAATCAAT CACCGCCTAC CGTGATACGA ATATAGATAC AGCGATAGAC TCTGATCATT CATATGTAGA TTGGTTGCAT ACGCCTTATA CCGATGCTTA TCAACAAACG AGCCAAGAAT TTCAGTTGAT TTCACCAGAC GGTAGAGACT TTAAATATAT TTTGGGTGCG TATTTATTTA GTTTAGACAG TACTACTGTT CGTGCTGCGA TTGGCGGTCC GGAAATCGCT TGGGCTGGTA TTGACCCAAG TTCTCCTGTC GTTTCTATTG ATGGTAAAGT CGACACAAGT AGTTACGCAC TTTTTTCTAA CGGCAGTTAT GATCTAAGCG AAGACTTAGT ATTAGGTTTT GGTGTGCGTT ACTCATCAGA AACGAAAGCA GTTGACTGGT CAATTGATGG TGATAATTCT GGCGGTTTTA AAATGGGAAC AGCCCATTTA GTTGATGAAC GTACTGATAC TCATTTATCT CCGTCATTGA ATATTAATTA TTCATTGTCA GAAAATAGCC AAACTTATGC ACGTGTATCG ACGGGCTTTA AAAGTGGTGG TTATAACTTA GATTTCGTGT CAAATGAAGT CATAGAAGAC GGTATTGATT TTGATAAAGA AACGGTAACG AGCTATGAGC TGGGTTATAA AGCGGAATTA ATGGATTACA GTTTACGATT AAATGCGTCA TTATTTTATG CAGCCTATGA AGATTACCAA GTAAACCAAT ATATTGAATT AGTTGGCGGT ACTACTGCAT TAAGTATTAC CAATGCAGCA GAAGTACTTA CACAAGGTTT TGAGCTTGAA GTTGACTACC AAATGACTGA CAATTTCAAC ATTAGCGGTT CATTAGGTTT GCTTGATGCG ACATTTGACA GCTTTATTGG TGGTGGCGCA AATGGATCAG ATGCATCAGG TAATCAATTG CCGAATGCAC CAAAAGTTGC AGCATCGCTT AGCCTTCAAT ATTATCAAGA AGTTGCAGCA TTATCGTCAA GCATTATGTA CCGTGTTGAT TACAACTACA CGGGCGAGCA ATATTTCTTA GTGAACAATG ATGACGGTTA TACTGTTCCA AGTACAGGCG AAACTGTTGA CTTTGATAAA GCTGAAAGTT TTAGTATGGT TAATGCGCGC ATTAGTTTAC TGACCGACAG TGGTGATTGG GAAGTATCAC TTTGGGGCAG AAACCTAACG GATAGCGATC ACTTAACAAA TAGTTTTAAA GAATTCTTTG GTGGTATCAT TGGCGCCTAC GCAAAACCTA GAACTTATGG TATTGAGGCC AAGTTTAATT TCTAA
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Protein sequence | MKNNTIKLSL LSAAVLVALQ SQSAFAQEEV VEQEEVVEQV KKKQKVETIT ITSQKRIERL IDVPISVTNV GHEELKQRGV KKLQDVSEIA PNISMTGGKN FNAKITIRGV GANSRNIGFD SRVGVYIDGV YLGQSPAVNQ GLVDLERVEV LRGPQGTLFG KNTIAGAINL ISQEPTDEFE GSVNINAGSN NLREYNLKLN LPLSDTTAAK VFLNKSEEDG YMKNTYLNTK PGGQDSLAGR VNLISELSDN LRLSFSGDYS KQDLTAFSDM GMTPIFGGTG HPFDGMLEAI YGDVLGGTAD SKYENYQDRD VFEDITIWGS SLTLDYDMDN DFAFKSITAY RDTNIDTAID SDHSYVDWLH TPYTDAYQQT SQEFQLISPD GRDFKYILGA YLFSLDSTTV RAAIGGPEIA WAGIDPSSPV VSIDGKVDTS SYALFSNGSY DLSEDLVLGF GVRYSSETKA VDWSIDGDNS GGFKMGTAHL VDERTDTHLS PSLNINYSLS ENSQTYARVS TGFKSGGYNL DFVSNEVIED GIDFDKETVT SYELGYKAEL MDYSLRLNAS LFYAAYEDYQ VNQYIELVGG TTALSITNAA EVLTQGFELE VDYQMTDNFN ISGSLGLLDA TFDSFIGGGA NGSDASGNQL PNAPKVAASL SLQYYQEVAA LSSSIMYRVD YNYTGEQYFL VNNDDGYTVP STGETVDFDK AESFSMVNAR ISLLTDSGDW EVSLWGRNLT DSDHLTNSFK EFFGGIIGAY AKPRTYGIEA KFNF
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