Gene CPS_2038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_2038 
SymbolpotB 
ID3518504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp2110641 
End bp2111519 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content42% 
IMG OID637284498 
Productspermidine/putrescine ABC transporter, permease protein PotB 
Protein accessionYP_268766 
Protein GI71278832 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.478202 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC TAAGTTGGAA CTTTTGGGGC CTACTCCCTG CCTACCTAGT TATGTCACTA 
TTGATGGTGT TACCGCTGTT AATAATTTTT TATGTTTCAT TCATGACTTC TGACGCCTAT
GGCGGATATA AAGCAATCTT CTCACTGCAA TCATACAGTC AAATTCTTTA TACAGCAGAT
TGGGATGATA ATTTAGTATT GAACTTTCAG TACCTTAAAA TTATCGCTAG AACGTTATTT
CTCTCTGGTG CAACAGCCGT GATCTGCCTG TTAGTTAGTT TCCCTGTTGC CTACTATATT
TCGCGCCAGA GCAACAACAT GAAAACTTTA TTGCTCTATT TGGTCACCTT GCCATTTTGG
GTCAGCATGG TAGTACGTGT ATACGCTTGG GTACTCATTT TGAGCAATGA TGGCGTACTG
GAAAGCAGCT TGCGTTTCTT TGGCTTGGTT GGTGATATCG ACAGTTTACT CTACAACAAC
GCTGCGATGA TGGTGGGGAT GGTATACACC TATATCCCGC TGATGATTTT GCCAATCTAT
GCCAGCATCG AAAAGTTAGA TACCCGTTTG ATTGAGGCTG CGAGTGACCT TTATAGCAGC
AGGATGAACA CCCTAAGAAG AATTATTCTG CCACTGTGCA AACCTGGCAT AGTCGCTGGA
TTTATCTTAG TGCTAGTGCC TTGTCTAGGC ACAGTACTTG AACCAATGCT ACTAGGCGGT
GGTAAGACAA TGATGCTAGG TAATCTGATT CAAAACCAAT TTGGCGTAGC GAGAAACTGG
TCTTTCGGTG CCAGCTTAAC GGTATTACTA CTGTGTATTG TCTTATTTTT TTTAATGTTT
CAAGCGCATC GAGCAAGTAA GTTGAGGGAG TTATCATGA
 
Protein sequence
MKKLSWNFWG LLPAYLVMSL LMVLPLLIIF YVSFMTSDAY GGYKAIFSLQ SYSQILYTAD 
WDDNLVLNFQ YLKIIARTLF LSGATAVICL LVSFPVAYYI SRQSNNMKTL LLYLVTLPFW
VSMVVRVYAW VLILSNDGVL ESSLRFFGLV GDIDSLLYNN AAMMVGMVYT YIPLMILPIY
ASIEKLDTRL IEAASDLYSS RMNTLRRIIL PLCKPGIVAG FILVLVPCLG TVLEPMLLGG
GKTMMLGNLI QNQFGVARNW SFGASLTVLL LCIVLFFLMF QAHRASKLRE LS