Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_2038 |
Symbol | potB |
ID | 3518504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 2110641 |
End bp | 2111519 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637284498 |
Product | spermidine/putrescine ABC transporter, permease protein PotB |
Protein accession | YP_268766 |
Protein GI | 71278832 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.478202 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAC TAAGTTGGAA CTTTTGGGGC CTACTCCCTG CCTACCTAGT TATGTCACTA TTGATGGTGT TACCGCTGTT AATAATTTTT TATGTTTCAT TCATGACTTC TGACGCCTAT GGCGGATATA AAGCAATCTT CTCACTGCAA TCATACAGTC AAATTCTTTA TACAGCAGAT TGGGATGATA ATTTAGTATT GAACTTTCAG TACCTTAAAA TTATCGCTAG AACGTTATTT CTCTCTGGTG CAACAGCCGT GATCTGCCTG TTAGTTAGTT TCCCTGTTGC CTACTATATT TCGCGCCAGA GCAACAACAT GAAAACTTTA TTGCTCTATT TGGTCACCTT GCCATTTTGG GTCAGCATGG TAGTACGTGT ATACGCTTGG GTACTCATTT TGAGCAATGA TGGCGTACTG GAAAGCAGCT TGCGTTTCTT TGGCTTGGTT GGTGATATCG ACAGTTTACT CTACAACAAC GCTGCGATGA TGGTGGGGAT GGTATACACC TATATCCCGC TGATGATTTT GCCAATCTAT GCCAGCATCG AAAAGTTAGA TACCCGTTTG ATTGAGGCTG CGAGTGACCT TTATAGCAGC AGGATGAACA CCCTAAGAAG AATTATTCTG CCACTGTGCA AACCTGGCAT AGTCGCTGGA TTTATCTTAG TGCTAGTGCC TTGTCTAGGC ACAGTACTTG AACCAATGCT ACTAGGCGGT GGTAAGACAA TGATGCTAGG TAATCTGATT CAAAACCAAT TTGGCGTAGC GAGAAACTGG TCTTTCGGTG CCAGCTTAAC GGTATTACTA CTGTGTATTG TCTTATTTTT TTTAATGTTT CAAGCGCATC GAGCAAGTAA GTTGAGGGAG TTATCATGA
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Protein sequence | MKKLSWNFWG LLPAYLVMSL LMVLPLLIIF YVSFMTSDAY GGYKAIFSLQ SYSQILYTAD WDDNLVLNFQ YLKIIARTLF LSGATAVICL LVSFPVAYYI SRQSNNMKTL LLYLVTLPFW VSMVVRVYAW VLILSNDGVL ESSLRFFGLV GDIDSLLYNN AAMMVGMVYT YIPLMILPIY ASIEKLDTRL IEAASDLYSS RMNTLRRIIL PLCKPGIVAG FILVLVPCLG TVLEPMLLGG GKTMMLGNLI QNQFGVARNW SFGASLTVLL LCIVLFFLMF QAHRASKLRE LS
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