| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2023 |
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| Symbol | gabD1 |
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| ID | 3520314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2094534 |
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| End bp | 2096006 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637284484 |
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| Product | succinate-semialdehyde dehydrogenase |
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| Protein accession | YP_268752 |
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| Protein GI | 71279853 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.491893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGAAC ATCAGGAATT AGGTTTACAA GATAACCAAT TAGTTAGAAG TTTTTCGTAT
ATCAATGGTC GTTGGCATAG TAGTGATTCA TACATTTCAG TGACAAACCC AGCCAATGGC
AAGGTGATTG CTCAAGTGAG CAATGCAGGT GTTGTTGAAA CCGAACTTGC AGTAAAAGCC
GCAAAAGATG CTTTAAAAAT GTGGTCAGCT AAATCTGCTA ATGAACGAGC TACGTTAATG
AGAAACTGGT TTAACTTGAT TATGGAAAAT CAAGATGATT TAGGACGCAT TTTAACTTTA
GAGCAAGGTA AACCTCTTGC TGAAGCTAAA GGCGAAATTG GTTACGGTGC AGCGTTTATT
GAATGGTTTG CTGAAGAAGG TAAACGCGTT TATGGCGATA CTATTCCAGC TCCATCGGGT
GACAAACGTA TTATTGTTAT TAAACAACCA GTAGGTGTTG TTGCGTCTGT TACCCCGTGG
AACTTTCCAA ATGCAATGAT TGCACGTAAA GCTGCAGCTG CATTATCGGC GGGTTGTACT
TTTGTTGTTC GTCCTGCAAC ACAAACGCCA CTTTCTGCCT TAGCAATGGC TGAGCTTGCA
GAGCGTGCTG GTATTCCAGC AGGTGTTTTT AATGTGGTAG TTGGTGAAGA TGCTCACGGT
ATAGGTAAAG TATTAACCCA ACACCCTGAT ATTGCTAAGT TCACTTTTAC GGGCTCAACC
CCTGTGGGTA AAGCGTTGAT CAGTCAATGT GCTACATCAG TGAAAAAAGT TTCAATGGAA
CTTGGTGGTA ATGCACCTTT TATTGTATTT GATGACGCTG ATATTGATGC GGCTGTACAG
GGCGCCTTAG TTTCAAAATA CCGTAATGCA GGTCAAACAT GTGTTTGTAC TAATCGTATT
TTTGTACAAA AAGGTGTTAT TGAACAATTT ACTAAAAAAT TCACGTCTGC AGTTGCGGCA
TTAGCAATAG GTGATGGTTT AACTGATGGC GTTAGTATTG GTCCTATGAT CTCAAGTGAT
GCGGTCTGCG ATGTTGAACT TTTAGTGAAA GACTCAATTA CTGCAGGTGC AATATTAGCT
TTAGGTGGTG AGCGAGACCA AGCAGGTGAT GCTTTTTATC AACCGACTAT TTTAACCAAT
GTTACAAATG ATATGCCTAT TGCCAAAAAT GAAATTTTTG GTCCTGTTAC CCCGATTATT
TCTTTTGAAG ATGAAGATGA AGTTATCGCT ATGGCAAATG ATACTGAATA TGGCTTAGCC
TCTTATTTTT ATGCGAGAGA TATTGGCCGA ATTTGGCGGG TTGCAGAGGG GTTAGAGTAT
GGCATGGTAG GTATTAACGA AGGCATGATT TCAAATGCGG CAGCACCTTT TGGCGGCGTT
AAGCAATCAG GTAACGGCCG TGAAGGCTCA AAATATGGCT TAGATGATTA TTTAGAAATC
AAATACTTGT GCATGGGTGG CTTAGGTAAA TAG
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| Protein sequence | MQEHQELGLQ DNQLVRSFSY INGRWHSSDS YISVTNPANG KVIAQVSNAG VVETELAVKA
AKDALKMWSA KSANERATLM RNWFNLIMEN QDDLGRILTL EQGKPLAEAK GEIGYGAAFI
EWFAEEGKRV YGDTIPAPSG DKRIIVIKQP VGVVASVTPW NFPNAMIARK AAAALSAGCT
FVVRPATQTP LSALAMAELA ERAGIPAGVF NVVVGEDAHG IGKVLTQHPD IAKFTFTGST
PVGKALISQC ATSVKKVSME LGGNAPFIVF DDADIDAAVQ GALVSKYRNA GQTCVCTNRI
FVQKGVIEQF TKKFTSAVAA LAIGDGLTDG VSIGPMISSD AVCDVELLVK DSITAGAILA
LGGERDQAGD AFYQPTILTN VTNDMPIAKN EIFGPVTPII SFEDEDEVIA MANDTEYGLA
SYFYARDIGR IWRVAEGLEY GMVGINEGMI SNAAAPFGGV KQSGNGREGS KYGLDDYLEI
KYLCMGGLGK
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