Gene CPS_1994 details

Gene Information

• Locus tag: CPS_1994
• Symbol: ccoO
• ID: 3522001
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 2063165
• End bp: 2063809
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637284456
• Product: cytochrome c oxidase, cbb3-type, subunit II
• Protein accession: YP_268724
• Protein GI: 71281529
• COG category: [C] Energy production and conversion
• COG ID: [COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit
• TIGRFAM ID: [TIGR00781] cytochrome c oxidase, cbb3-type, subunit II

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.315866
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATT CACATGAAAA AGTTGAAAAG AACGTTGGCT TGTTCTTCCT ATTTACTGTC 
TTTGCTATCA GCATCGGTGG TTTAGTAGAA ATTACGCCAT TGTTTTTCCA AAAAGAATTA 
GCGACGCCAG TTGATAACTT AAAACCTTAC ACTGCCCTGC AAATGGAAGG TCGTGATATC 
TACATCCGTG AAGGTTGTAG TAACTGTCAC AGTCAAATGA TTCGTCCATT TCGCGCTGAA 
ACAGAGCGTT ACGGTCACTA CAGTGTTGCG GGCGAAAGTG TTTGGGAACA TCCATTTTTA 
TGGGGTTCTA AGCGTACTGG TCCTGATCTA GCACGTGTTG GCGGTCGTTA TAGTGATGAT 
TGGCATATTG CCCATTTAAC AGATCCTCGT TCAGTTGTGC CAGAATCAAA CATGCCTGCA 
TATAGCTGGT TGAATACTGA CACACTTGAT GGTGAGTTAA CGGGTAAGAA GCTAGCAACA 
TTTAACTTCT TAACACGTAA CCGTAGTCAT AAAGACGAAA ACGGCAATGC AATTCCGCTT 
TATACTCAAG CAGAAATTGA CGGCGCTAAA GATGCTGTAA AAGGTAAAAC TGAAATGAGT 
GCCTTGATTG CGTATTTGCA ATCACTTGGC CACGCATTAA AGTAA 

 

Protein sequence

MKNSHEKVEK NVGLFFLFTV FAISIGGLVE ITPLFFQKEL ATPVDNLKPY TALQMEGRDI 
YIREGCSNCH SQMIRPFRAE TERYGHYSVA GESVWEHPFL WGSKRTGPDL ARVGGRYSDD 
WHIAHLTDPR SVVPESNMPA YSWLNTDTLD GELTGKKLAT FNFLTRNRSH KDENGNAIPL 
YTQAEIDGAK DAVKGKTEMS ALIAYLQSLG HALK