| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1970 |
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| Symbol | deoA |
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| ID | 3520590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2038824 |
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| End bp | 2040140 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637284432 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_268700 |
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| Protein GI | 71280126 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.380336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTGTAA CCGCTAAAAT CATCCCTCAA GAGATTATTC GACTGAAACG TGATGGTAAA
ATATTAGATG AACAAGCGAT AAATGGCTTT GTTTCAGGCC TTGTTGATGG CAACTTTTCA
GATAGCCAAG TTGGCGCTAT GGCCATGGCT ATTTTTCAAC AGGGTATGTC GATTGATGAA
AGAGTCAATT TTACCAAGGC TATGATGCGC TCAGGAGAGG TTCTTAGCTG GGAAGGTTTT
GATGGTCCTA TTGTTGATAA GCATTCAACG GGTGGTGTCG GTGATAAAGT TAGCTTTATG
TTAGCTGCTA TCGTTGCTGC TTGCGGCGGT TATGTTCCTA TGATTTCAGG GCGTGGTTTG
GGCCATACTG GTGGTACCGC AGATAAACTT GAAAGTATTG CTGGTTTTAA TGTACAACCC
AGTATTAGTG AATTTAAACG TATTGTTAAA GACGTTGGTG TTGCCATTAT TTCACAAACC
GATAATTTAG CACCCGCCGA TAAACGTTTG TATTCTATTC GTGATGTGAC CGCTACAGTT
GAATCTATTC CATTGATCAC CGCTTCTATC TTATCGAAGA AGCTTGCCGC AGGACTTGAT
GTCTTAGTGA TGGATGTCAA GGTTGGCAAT GGTGCCATGA TGAATAATTT AGATGATGCT
AAAGCACTTG CACAAAGCAT TACCAGTGTT GCTAACGGAG CGGGCGTTAA AACACAGGCT
ATTATTACCG ATATGAATCA AGTCTTGGGT ACTAGTGCCG GTAACGCCAT AGAAATGTAT
GAAACAGTTA AATACTTAAC CGGTAAACAA CGAGAGCCGC GCTTACATAA AATTGTGCAA
GCACTTGCTA GTGCAATGCT TATTAATACA AATCTAGCGA GTAGTGAAAA AGATGCCCGT
GAGAAAATTG ATAAGGTATT AAATTCAGGC TTAGCGGCTG AAAAATTTGA TCGCATGGTA
TCCGCGTTAG GTGGACCGAA AAACTTTATA GAAAAGCCTT GGGACTCAAT GAAAAAGGCA
AATGTTATTA CTGAGGTGCG AGCATTACAG CATGGTTACA TTGCGCAGAC GGACACTCGT
GCTATTGGCA TGTCGGTGGT TGGTTTAGGT GGAGGGAGAA CGGCACCTAC ACAACAGGTA
GATCACAGTG TTGGTTTTGA TCGGATATTA CCACTGGGTG TACAAGTGAA TCGTGGCGAA
GTGATTGCAC GTTTACATGC TAAAGATGAA GACTCAGCCA ATAGAGCCAT TGAGCAATTT
AATAATGCGA TTACTTACTC TGAAGAGAGC CCTGAGCTAC CACCGGTAAT CTACTAA
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| Protein sequence | MSVTAKIIPQ EIIRLKRDGK ILDEQAINGF VSGLVDGNFS DSQVGAMAMA IFQQGMSIDE
RVNFTKAMMR SGEVLSWEGF DGPIVDKHST GGVGDKVSFM LAAIVAACGG YVPMISGRGL
GHTGGTADKL ESIAGFNVQP SISEFKRIVK DVGVAIISQT DNLAPADKRL YSIRDVTATV
ESIPLITASI LSKKLAAGLD VLVMDVKVGN GAMMNNLDDA KALAQSITSV ANGAGVKTQA
IITDMNQVLG TSAGNAIEMY ETVKYLTGKQ REPRLHKIVQ ALASAMLINT NLASSEKDAR
EKIDKVLNSG LAAEKFDRMV SALGGPKNFI EKPWDSMKKA NVITEVRALQ HGYIAQTDTR
AIGMSVVGLG GGRTAPTQQV DHSVGFDRIL PLGVQVNRGE VIARLHAKDE DSANRAIEQF
NNAITYSEES PELPPVIY
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