| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1957 |
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| Symbol | |
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| ID | 3519010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2019519 |
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| End bp | 2020853 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637284419 |
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| Product | putative RND efflux system protein |
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| Protein accession | YP_268687 |
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| Protein GI | 71278364 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTGGT TATCTTCAGC GAAGGTATTT TACCTTCAAT TATTTATTCT GCTTTGTTGG
GCATTTAGTC CTTTGGTGCA CAGTAAAAAT GAAGTAAAAA CACCTGAACA GCAACACTTA
ACATTGTCTT CGGCGATCAA ACGAACGCTT AAAGATAACC CTTCACTTAA GGTATTTAAA
TTTCGTCAGA ACGCTCTTGA GGGCCAATTA CAAATTCAGG GTTTAAGTCC GGCTTATGAA
GTCGGTTTTG AAATGGAAAA TTTCGCCGGT ACGGATGATG TAGGTGTCTT CAAAAGTACA
GAATTCACTC TTTCACTTTC TTCAATTTTA GAATTAGGGG ATAAAAGAAA AGCGCGTGCC
GATGTGATTA ATAGCCGTAG CTCACAAATT GCGGCGATGC GTAAAATTGA AGCGCTAAAT
GTGCTAGGTG AAGTGACTCG TCGGTACATT GACATCATTG CGGCACAAGA GCGTTTGTTA
TTAGCTAAAG AGGCGACATT ACTCGCTGAG GAGACGTTAA CCGAAGTTGA AAAACGCTCA
AAAGCGGGAG TAGCACCTAA AGCAGAGATA AAACGAGCAC TAGCCGCAGT AGGCAATGCC
AGACTTACCA CCTCATCTGA GCAACAACAG CTGGACTACG CAAGAGTTGC GCTCGCTATG
ATGTGGAATG AAACGACACC ATCATTTACG GGTGTTGAAG GACGCTTATA TCAGTTTTCA
ACGGATATTG AATTTAAAGA GTTACTGGAA AAAGTTAAAC AAAACCCTGA AATTTTAATT
TATGCCACTG AAGAACGATT AAAAGAAGCT CAGTTAAGAT TAGCCCGTAC AGAGTCCAGT
GCAGATATAA AATGGTCGGT CGGTATCAAA CAAATACAAG CGCTAAATGA TACTGCACTA
ACCGCCGGTT TTAGCATGCC GTTATTTTCT TCAAAACGAA ATGTCGGTGC CATTAGTTCA
GCACAAGCAG CACGTGACGA AGTAGTTGTT AAAAGGAAAG CGACCATGCT GGCTTTACAT
CATCAGCTAT ATCGAGCTTA TGCGAACAGG AAACAGGCTA TTTTTACTGC GAAAAATTTA
AAAGAGAGCA TCATACCTAC ATTAACAGAA GCGTTAAATG AGACCCAGGT AGCATACCAA
CGTGGCCGTT ACAGTTATTT GGATTATTTA AGTGCAAGGC AGGAATTGCT CTTTGCTCGT
CGCGCCATGA TTGAATCAGC AGCAGCCGCT TTACGTTATG GCACACAAAT AGAACAACTT
ATCGCTGAGC CATTGTCTGC GACACAGAGC AATCATGCGC AACCAAATAA CTTCATCAAT
CAAAAAGCAT TTTAA
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| Protein sequence | MSWLSSAKVF YLQLFILLCW AFSPLVHSKN EVKTPEQQHL TLSSAIKRTL KDNPSLKVFK
FRQNALEGQL QIQGLSPAYE VGFEMENFAG TDDVGVFKST EFTLSLSSIL ELGDKRKARA
DVINSRSSQI AAMRKIEALN VLGEVTRRYI DIIAAQERLL LAKEATLLAE ETLTEVEKRS
KAGVAPKAEI KRALAAVGNA RLTTSSEQQQ LDYARVALAM MWNETTPSFT GVEGRLYQFS
TDIEFKELLE KVKQNPEILI YATEERLKEA QLRLARTESS ADIKWSVGIK QIQALNDTAL
TAGFSMPLFS SKRNVGAISS AQAARDEVVV KRKATMLALH HQLYRAYANR KQAIFTAKNL
KESIIPTLTE ALNETQVAYQ RGRYSYLDYL SARQELLFAR RAMIESAAAA LRYGTQIEQL
IAEPLSATQS NHAQPNNFIN QKAF
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