Gene CPS_1949 details

Gene Information

• Locus tag: CPS_1949
• ID: 3519584
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 2011741
• End bp: 2013705
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637284411
• Product: sensory box protein
• Protein accession: YP_268679
• Protein GI: 71277945
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGTAAAAA TAACGAATAA TGTTCATCAA TTTGGCTATG AACCAGCGGA GTTCTTATCA 
AAAAAGCTAA CATTTACTGA CATTGTCCAC CCTGAAGATT TAGATCGTAT TGTCAAAGAA 
ATGGTCGCTT TTTTAAAGAA CGATATCGTT TATTTTGAAC AGGACTATCG AATATTTACC 
AAAGGTGGTG ATATTCGTTG GGTCTATGAA AAAACGATAT TGAAAACAGA TGATACAGGA 
TTGCCAACTC TCGCTAAAGG TTATCTGCTT GATATAACTG AACGTAAACT AGCAGAGCAG 
CAGTTACGTG AATCCTCAGA AAAATACTAC CAGTTGTTCG ATAAAAACAA GGCGATTGAG 
TTACTGATAG ATCCCAATAC TCAAAAAATC ATCAAAGCAA ATGGTGCTGC TGAAATATTC 
TACGGCTATA ACGAACAAGA ATTTAAGAAC TTATCTATCA GCGATATCAA TATACTGTCA 
GTTGACAAAA TAGAAGCGGA AATAGAACTA GCACTAACCG AAAAGCGTGA CTATTTTAAT 
TTTAGACATC AGCTTAAAAA CGGCGAAATA AAGGATGTTT GTGTCTATTC AGGCCCTATA 
ATAATGGCTG GCCGTAAGGT ACTTTATTCA ATTATCCATG ATATTACCGA TCAGCGTCAG 
GCCGAAAAAG CCCTTTTAGA AAGCGAACAA AAATTCCGCT CATTTATAGA AACAACCTCT 
GAAGGATTTT TAATTCTTAC ACCACAATTA GATATCAACT TTTCTAATAC CGCTATTTGC 
CAACTAGCCG GTTATTCATT AACTGAAATG CAGGGAAAAT CAGTATTAGT CTTCGTCACC 
TCTGAATCCC GTAAGCAATT ACGTCAACAG TTGATTATGG CGCGTTCTCA CTCGCACCTA 
GCCGCCGAGT TAACCCTAAT GCACAAAAAT GGCCATCATG TATTTATTCG ATACAAGGCG 
ACAGTTATGG CCGATGGTAA CGGTTTTTTT ACTTATATTA CTGATATTAC CGAACGAAAG 
CTGAAAGAAG TAGAACTAAG AACATTAAAC AGTGCAGTAA AACATAGCGC CAGCTCAATT 
ATTATCACTG ATAAAAACGG TATTATTGAA TACGTTAATC CTCGGTTTTG CGTGGTAACT 
GGTTACAGTG AACAAGAAGT TATTGGTCAG ACACCAAGCT TAATTAGTAC CGCGAAGACA 
CGAACAGAAC TACATACCGA ATTGTGGAAA ACAATTCTTG CCGGTGATGA TTGGCATGGA 
GAAACCTATA ACTGTACCAA AAACGGTGAA TTTTATTGGT CGATGATGTC AATTTCACCC 
ATTAGGAATG AGAATGGAGA AATAAGTCAG TTTGTTAGTG TTAGTCAGGA TATAACTGAA 
CATAAATCCA AGCATTTAAA AATGGAAGAA TTAGCCCTCA GAGATCCCTT AACGGGTTTA 
GCTAATCGCC GTTTGTTTGA TGATCGCCTT AACCAAGCGA TTCAAATAAT CAGCTATCAA 
AATAGAAATG GTATTGGAAT TATTATGCTT GATCTTGACC ATTTCAAAGA TATCAATGAT 
ACCTATGGTC ATGACGTCGG TGATTTAATA TTAAAAGAAG TCGCACGCAA ATTACTATTG 
TCTACTCGTA AAGAAGATAC CGTCTCTCGT TTTGGAGGCG ATGAGTTTAT TATACTGTTA 
CAGGATGTTA GTAAAGTCTC TGATGCTCAA CGAGTGGCAG CAAATATTCT TAAGACTTTA 
TCAGAGCCAA TAGATGTAGG CGAGCATACT TTTTCTATCA CCTGTAGTTT GGGTGTTTGT 
CTCGCACCTC AAGATGGCTG TATTCCAACT CAACTGTTAA AAGCCGCAGA CCTTGCGTTA 
TATCAGGCAA AAATAGCGGG TCGTAATAAC ATACAATTTT ATAACACAGG TATGCAGCAA 
TTGAGCGAAA GCAATAAACA CTCAGAACAA CTAATCTCTT CATAG 

 

Protein sequence

MVKITNNVHQ FGYEPAEFLS KKLTFTDIVH PEDLDRIVKE MVAFLKNDIV YFEQDYRIFT 
KGGDIRWVYE KTILKTDDTG LPTLAKGYLL DITERKLAEQ QLRESSEKYY QLFDKNKAIE 
LLIDPNTQKI IKANGAAEIF YGYNEQEFKN LSISDINILS VDKIEAEIEL ALTEKRDYFN 
FRHQLKNGEI KDVCVYSGPI IMAGRKVLYS IIHDITDQRQ AEKALLESEQ KFRSFIETTS 
EGFLILTPQL DINFSNTAIC QLAGYSLTEM QGKSVLVFVT SESRKQLRQQ LIMARSHSHL 
AAELTLMHKN GHHVFIRYKA TVMADGNGFF TYITDITERK LKEVELRTLN SAVKHSASSI 
IITDKNGIIE YVNPRFCVVT GYSEQEVIGQ TPSLISTAKT RTELHTELWK TILAGDDWHG 
ETYNCTKNGE FYWSMMSISP IRNENGEISQ FVSVSQDITE HKSKHLKMEE LALRDPLTGL 
ANRRLFDDRL NQAIQIISYQ NRNGIGIIML DLDHFKDIND TYGHDVGDLI LKEVARKLLL 
STRKEDTVSR FGGDEFIILL QDVSKVSDAQ RVAANILKTL SEPIDVGEHT FSITCSLGVC 
LAPQDGCIPT QLLKAADLAL YQAKIAGRNN IQFYNTGMQQ LSESNKHSEQ LISS