Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1934 |
Symbol | |
ID | 3521805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 1994428 |
End bp | 1995291 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637284396 |
Product | mechanosensitive ion channel family protein |
Protein accession | YP_268664 |
Protein GI | 71281333 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.117079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATATG AACAACTGGT AAGTTTTTTA AACATTTCTA TCGCTTCAAT TGCAGAGCAA CCTATTACTA TTGGTGACAT TTTGCTGGTC CCCACTTTTT TGATTATTGG TTTTTTCTTG ACAAAATGGT CGGTAAAAAT AATTACTCAC CGCTTAACAA CCAAAAATAC CGATCCTAAT ATTATTCATT TACTGCAACG AGTATTCTAT GTTGTGGCAA TAACGATCAT AGTGATCACC ACGCTAGACG TTATCAATGT GCCCATCACT GCTTTTGCAT TCTTATCGGG GGCTATCGCC ATTGGTTTCG GTTTTGGTGC ACAAAACATT ATAAATAACT TTATTAGCGG TTGGATACTA ATGTGGGAGC GCCCTATTCG CATAGGTGAC TTTCTCGAAG TTGAAGATGC AAAGGGTATC GTTGAGCAAA TTAACACGCG GTCAACACGG ATAAAGCGTG TTGATGGCGT ACATTTATTA ATACCAAATA GTAAGTTAAT TGAAAATACG GTGATTAACT GGACGCTTGT CGATAGTTTA ATGAGATCAA CGGTAAGAGT TGGGGTCGCT TATGGCACGT CAGCAAAAAA AGTGTCTGAA CTTATTTTGC AGGCAACAAC AGAGCAGTCA CGAATATTAA CTGATCCAAA ACCTCTGGTT GTCTTTGAAG ATTTTGGTGA TAACGCCTTA ATATTTGAAG TGAATTTTTG GATGAAGTCA AATGTTGAAG GGGGGTTGAG AGTGATGAGA AGTAACATTC GTTTTAGATT AGATGAACTA TTTGAAGAGC ATAATATTAT TGTTGCCTTC CCGCAAAGAG ATGTACATCT TGACGGTTCA ATTACTATCC TAAACAAGGA TTAA
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Protein sequence | MTYEQLVSFL NISIASIAEQ PITIGDILLV PTFLIIGFFL TKWSVKIITH RLTTKNTDPN IIHLLQRVFY VVAITIIVIT TLDVINVPIT AFAFLSGAIA IGFGFGAQNI INNFISGWIL MWERPIRIGD FLEVEDAKGI VEQINTRSTR IKRVDGVHLL IPNSKLIENT VINWTLVDSL MRSTVRVGVA YGTSAKKVSE LILQATTEQS RILTDPKPLV VFEDFGDNAL IFEVNFWMKS NVEGGLRVMR SNIRFRLDEL FEEHNIIVAF PQRDVHLDGS ITILNKD
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