Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1879 |
Symbol | cydD |
ID | 3520373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1935398 |
End bp | 1937176 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637284341 |
Product | ABC transporter, ATP-binding/permease protein CydD |
Protein accession | YP_268609 |
Protein GI | 71279911 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGAGA AAAATGAACA ACAAAAAAAG CAAGTTAACG ACTGGCTCAA ATATCAGAAA AAATACGCTC ACGGTAAGTT AAGTCGCGCT ATTGCCTTAG GATCATTAAA TGGATTATTA ATGATAATAC AAACAGCAAT GCTGGCTTAC CTTATTGATT TAGTGATATT TCCGAGTGAA GATCTGAGTT TAACGAATAG CTTAAGCAAC AGTGTAACCA CAGAGAGTAT TCTTTTTTCA GAGACCACTC TAATAAGCAT GGCATTAGTC GCCGTTATTT TTTGTCGTGC GGCATTAGGG TATTTTAGTG AATGTTATAG TCGTCGTGGT GCTATGGATA TTAAAGCCAA TATTCGTTCA CGATTGCTCA ATCGCTTATT TCAGTTCGGT CCTGCTTATA CGCAAACTAA AGGCAGTGCC AAGTTAAGTC ACTTATTGCA TCAAGGTATT GATTCATTGG AGGATTACTT TGCGGGTTAT CTTCCGGTAA TTGCTTACTG CGCGGTTATA CCTCTAGCAA TACTTATCGC TGTATTTCCC ATTGATTGGC AATCAGGATT AATTTTGTTA ATTACTGCGC CCATGGTGCC ATTTTTCATG ATACTCATTG GTCATAAGGC ACAGCGTTTA AATCAAGAAC ATTGGGCTAA GTTACAAAGG ATGAGCAGTC ACTTTCTCGA TATTATTCAA GGATTAACAC AACTTAAAAT ATTCAACGCT TCACGTAGAG AAATCGCTGC CGTAAAAAAA ATCAGTGATG ACTATGGTGA TGAAACTATG GGCATTTTAA AAATTGCTTT TCTGTCATCA TTTGTTTTAG AGTTTTTAGC CTCTATTTCA ATCGCATTAG TGGCGGTGGT ACTCGGCTTT CGTTTGTATT ATGGCGATGT TGATTACGTT TTTGCGCTAT GGGTTCTATT ACTCGCACCT GAATTTTATC TGCCTTTTAG ACAACTCGGG ACCCAGTATC ATGCAAAGAT GGCTGGCGTC ACAGCAGCAG AAGACTTGGT TGAAGTACTG AGTCAGCCAC AAGTACATTA TTCGCTGGAA GAAAAATTTA CAGCACCATT CTCTATCAGC CTTGTGCAGG CAGAGTTTGC TTACCCTGAC CGCAGTAATG CTTTAACTCA AGTAAATATT GAATTCTCAT CTCAGGGTTT ATATGCCGTC ATAGGTGAAA GTGGCTCTGG CAAGTCAACC TTGATAGATA TGGTGTTAGG ATTTGTTCAA CCAGATTCTG GGCAGGTAGT CGTCAACAAT CAGCCGTTAA CTGCTGCTAA TCGTGATCAC TGGTTGAAAC ATTGCGGATG GATTTCCCAA CAAGCACAAG TATTTTATGG CTCATTAGCT TTTAATATTG CCTTATCTGA TAATTATCAA GATGACTTAG TGATCGAAGC ACTAGAAAAG GCAGGATTAG CCAGCTTTGT GCAAACCCTT GAACAAGGTA TTGAGAGTGA AATTGGCGAA GACGGAGCAG GGCTCTCAGG TGGACAAGCA CAACGTTTAG CGCTTGCGCG AGTATTCTAT CATCAACCTG ATGTTTTGAT ACTAGATGAA CCAACAAGCC ACCTTGATCA ACAAACGGAA CAAATCATCA CCTCTTCAAT CAATGCCTAT GCTGAAAATC ATATTGTCAT CGTTATTGCC CATCGTTTAC ATACTGTTAT CGACGCAAAA AAAATCATTG TGCTTGAGCA AGGGAAAGTC ATCGAAACGG GCACACATCA AGAGCTGTTA AGTCATGATG GCTATTACGC GCAGCAGGTG AATGTATGA
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Protein sequence | MTEKNEQQKK QVNDWLKYQK KYAHGKLSRA IALGSLNGLL MIIQTAMLAY LIDLVIFPSE DLSLTNSLSN SVTTESILFS ETTLISMALV AVIFCRAALG YFSECYSRRG AMDIKANIRS RLLNRLFQFG PAYTQTKGSA KLSHLLHQGI DSLEDYFAGY LPVIAYCAVI PLAILIAVFP IDWQSGLILL ITAPMVPFFM ILIGHKAQRL NQEHWAKLQR MSSHFLDIIQ GLTQLKIFNA SRREIAAVKK ISDDYGDETM GILKIAFLSS FVLEFLASIS IALVAVVLGF RLYYGDVDYV FALWVLLLAP EFYLPFRQLG TQYHAKMAGV TAAEDLVEVL SQPQVHYSLE EKFTAPFSIS LVQAEFAYPD RSNALTQVNI EFSSQGLYAV IGESGSGKST LIDMVLGFVQ PDSGQVVVNN QPLTAANRDH WLKHCGWISQ QAQVFYGSLA FNIALSDNYQ DDLVIEALEK AGLASFVQTL EQGIESEIGE DGAGLSGGQA QRLALARVFY HQPDVLILDE PTSHLDQQTE QIITSSINAY AENHIVIVIA HRLHTVIDAK KIIVLEQGKV IETGTHQELL SHDGYYAQQV NV
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