Gene CPS_1879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1879 
SymbolcydD 
ID3520373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1935398 
End bp1937176 
Gene Length1779 bp 
Protein Length592 aa 
Translation table11 
GC content40% 
IMG OID637284341 
ProductABC transporter, ATP-binding/permease protein CydD 
Protein accessionYP_268609 
Protein GI71279911 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 
TIGRFAM ID[TIGR02857] thiol reductant ABC exporter, CydD subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGAGA AAAATGAACA ACAAAAAAAG CAAGTTAACG ACTGGCTCAA ATATCAGAAA 
AAATACGCTC ACGGTAAGTT AAGTCGCGCT ATTGCCTTAG GATCATTAAA TGGATTATTA
ATGATAATAC AAACAGCAAT GCTGGCTTAC CTTATTGATT TAGTGATATT TCCGAGTGAA
GATCTGAGTT TAACGAATAG CTTAAGCAAC AGTGTAACCA CAGAGAGTAT TCTTTTTTCA
GAGACCACTC TAATAAGCAT GGCATTAGTC GCCGTTATTT TTTGTCGTGC GGCATTAGGG
TATTTTAGTG AATGTTATAG TCGTCGTGGT GCTATGGATA TTAAAGCCAA TATTCGTTCA
CGATTGCTCA ATCGCTTATT TCAGTTCGGT CCTGCTTATA CGCAAACTAA AGGCAGTGCC
AAGTTAAGTC ACTTATTGCA TCAAGGTATT GATTCATTGG AGGATTACTT TGCGGGTTAT
CTTCCGGTAA TTGCTTACTG CGCGGTTATA CCTCTAGCAA TACTTATCGC TGTATTTCCC
ATTGATTGGC AATCAGGATT AATTTTGTTA ATTACTGCGC CCATGGTGCC ATTTTTCATG
ATACTCATTG GTCATAAGGC ACAGCGTTTA AATCAAGAAC ATTGGGCTAA GTTACAAAGG
ATGAGCAGTC ACTTTCTCGA TATTATTCAA GGATTAACAC AACTTAAAAT ATTCAACGCT
TCACGTAGAG AAATCGCTGC CGTAAAAAAA ATCAGTGATG ACTATGGTGA TGAAACTATG
GGCATTTTAA AAATTGCTTT TCTGTCATCA TTTGTTTTAG AGTTTTTAGC CTCTATTTCA
ATCGCATTAG TGGCGGTGGT ACTCGGCTTT CGTTTGTATT ATGGCGATGT TGATTACGTT
TTTGCGCTAT GGGTTCTATT ACTCGCACCT GAATTTTATC TGCCTTTTAG ACAACTCGGG
ACCCAGTATC ATGCAAAGAT GGCTGGCGTC ACAGCAGCAG AAGACTTGGT TGAAGTACTG
AGTCAGCCAC AAGTACATTA TTCGCTGGAA GAAAAATTTA CAGCACCATT CTCTATCAGC
CTTGTGCAGG CAGAGTTTGC TTACCCTGAC CGCAGTAATG CTTTAACTCA AGTAAATATT
GAATTCTCAT CTCAGGGTTT ATATGCCGTC ATAGGTGAAA GTGGCTCTGG CAAGTCAACC
TTGATAGATA TGGTGTTAGG ATTTGTTCAA CCAGATTCTG GGCAGGTAGT CGTCAACAAT
CAGCCGTTAA CTGCTGCTAA TCGTGATCAC TGGTTGAAAC ATTGCGGATG GATTTCCCAA
CAAGCACAAG TATTTTATGG CTCATTAGCT TTTAATATTG CCTTATCTGA TAATTATCAA
GATGACTTAG TGATCGAAGC ACTAGAAAAG GCAGGATTAG CCAGCTTTGT GCAAACCCTT
GAACAAGGTA TTGAGAGTGA AATTGGCGAA GACGGAGCAG GGCTCTCAGG TGGACAAGCA
CAACGTTTAG CGCTTGCGCG AGTATTCTAT CATCAACCTG ATGTTTTGAT ACTAGATGAA
CCAACAAGCC ACCTTGATCA ACAAACGGAA CAAATCATCA CCTCTTCAAT CAATGCCTAT
GCTGAAAATC ATATTGTCAT CGTTATTGCC CATCGTTTAC ATACTGTTAT CGACGCAAAA
AAAATCATTG TGCTTGAGCA AGGGAAAGTC ATCGAAACGG GCACACATCA AGAGCTGTTA
AGTCATGATG GCTATTACGC GCAGCAGGTG AATGTATGA
 
Protein sequence
MTEKNEQQKK QVNDWLKYQK KYAHGKLSRA IALGSLNGLL MIIQTAMLAY LIDLVIFPSE 
DLSLTNSLSN SVTTESILFS ETTLISMALV AVIFCRAALG YFSECYSRRG AMDIKANIRS
RLLNRLFQFG PAYTQTKGSA KLSHLLHQGI DSLEDYFAGY LPVIAYCAVI PLAILIAVFP
IDWQSGLILL ITAPMVPFFM ILIGHKAQRL NQEHWAKLQR MSSHFLDIIQ GLTQLKIFNA
SRREIAAVKK ISDDYGDETM GILKIAFLSS FVLEFLASIS IALVAVVLGF RLYYGDVDYV
FALWVLLLAP EFYLPFRQLG TQYHAKMAGV TAAEDLVEVL SQPQVHYSLE EKFTAPFSIS
LVQAEFAYPD RSNALTQVNI EFSSQGLYAV IGESGSGKST LIDMVLGFVQ PDSGQVVVNN
QPLTAANRDH WLKHCGWISQ QAQVFYGSLA FNIALSDNYQ DDLVIEALEK AGLASFVQTL
EQGIESEIGE DGAGLSGGQA QRLALARVFY HQPDVLILDE PTSHLDQQTE QIITSSINAY
AENHIVIVIA HRLHTVIDAK KIIVLEQGKV IETGTHQELL SHDGYYAQQV NV