Gene CPS_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1872 
Symbol 
ID3521587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1925109 
End bp1926863 
Gene Length1755 bp 
Protein Length584 aa 
Translation table11 
GC content39% 
IMG OID637284334 
Productmur ligase family protein 
Protein accessionYP_268602 
Protein GI71281117 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0769] UDP-N-acetylmuramyl tripeptide synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.960352 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAAAAG AAAATATAAC ACTGAGCTTA GATGATAATC GTCGGCTGAC GGGTAGAAAT 
TTATTATCCG ATCAGCCTGG CGCAATCATT GATGCTTTTG TATCAGGTAT TGATAAAATT
ACCGTGGTAA ATGTTTGGTC AAAGTATGCT CAACAGTTAC TCAACGCCGT TAACTGGTTA
GAGGATAAAA CTTTCTCTCG AATTTTCGAA GATGGAATAT CTATTGCCAT TAGCGCACCC
TTAGATGCAC TTTATGCTGC GTGTGATTTG AATGAGTTAG CATGGCAGCT TACCTGTAAT
GAATTAACTC AAACACCCAA TGAAGAATCA ATTTCAGCAG CAATAAGTCG TTTAAACCAA
GTGATAGCTG AGGAAGTCAA TCCAGAGTTA CTTGAGTTAA TTAAGCAGTC AACGTCTAAA
AATATTGTCT ATTTGGTTGA TGATGATGAA TTTTCATTGG GTTATGGTAC TACGGCACAA
AGTTGGCCAA TATCAGCATT GCCTGAGGTA TCAACTATAA ACTGGTCACA ATACAAATCG
ATTCCACTGG CTTATGTAAC AGGCACTAAT GGCAAATCGA CCAGTGTTCG CATTATGTCG
CAAATTATCA AACAAGCGGG TAAATGTTGT GGTGTTACCT CAACCGATTT TATCCGGGTA
GGCGATAATA TTATTGATCA TGGCGACTAT TCTGGTCCGG GAGGTGCAAG AATGTTATTA
CGACACCCTG ATACAGAAAC CGCTATTTTA GAAGTTGCTC GGGGTGGAAT TTTACGTAGA
GGATTACCGA TAGATAATGT AGATGCAGCA TTGATCACTA ATATTGCCGA GGATCACCTA
GGGCAATATG GTATTAATAC TGTTTCAGCA TTGGCTCAAG CTAAAGCTGT TGTTGCTAAA
GGGTTGTTAC CTAACTTAGA AGATAAAGGG CAGGAGCATA ATAGGCAAGA TAAGGGCAGG
TTGGTGCTCA ATGCAGATGA TGAAAATTTA GTTGTTTTAG CGCCTGAAAT ACCCGTTACT
AAGTCATGGT TTTCCTTACA TGAAGATAAT GCGACATTAC AGCAACATAA ACAAAAAGGT
GGCGCTGTTT GTTTTGTTAG AGAACAACAC TTGGTTTATT CAGTCGGTAA TGAAGAGTCG
GTAATCATTG CGGTTAATGA CATTCCTATG ACGCTAAACG GTGCGGCTTT GCACAATATT
CAAAATGCCC TTGGCGCTAT CGCGTTAGCT AAATGTCTCA ATGTTGAGAA TGAGGCTATT
AAAATAGCGC TATCAAATTT TGCCAGCAAT GTTGAGGATA ATCCCGGCAG AGGTAATCAT
TTTACTGTTA AAAGTGCAGA AGTGATTATG GACTTTGCAC ATAATGTTCA TAGCATGGAA
GCGATGGCTG TAACCACGGC GAACATGAAA GCACAGCGTA AATTTTTAAT GCTAAGTCAT
GCGGGAGATC GAACTGACAA TGAGATCATC AATATGACTA AAACGGCATT AAAAATGAAA
CCTGATTTCA TCGTTGCTGC GGAGTTAGTT CCTTATTTAC GAGGGAGAAC ATTGGGAGAA
ATACCTCAGC TTATTGTAGA TACGGCGCTT GCTTATGGCA TGAAAAGAAG TGACATTTAT
ATTGCAGATA GTCCTTTTAA AGGCGCAAAC TATATTGTAG AACAGTTACG AGAAAAGGAT
TTAGCATTAC TGATGGTTTT ATCAGAGAGA GAAGAGATAA TCGAGCTTTT GCTTGATAAA
GCTTTTTTTA GATAG
 
Protein sequence
MLKENITLSL DDNRRLTGRN LLSDQPGAII DAFVSGIDKI TVVNVWSKYA QQLLNAVNWL 
EDKTFSRIFE DGISIAISAP LDALYAACDL NELAWQLTCN ELTQTPNEES ISAAISRLNQ
VIAEEVNPEL LELIKQSTSK NIVYLVDDDE FSLGYGTTAQ SWPISALPEV STINWSQYKS
IPLAYVTGTN GKSTSVRIMS QIIKQAGKCC GVTSTDFIRV GDNIIDHGDY SGPGGARMLL
RHPDTETAIL EVARGGILRR GLPIDNVDAA LITNIAEDHL GQYGINTVSA LAQAKAVVAK
GLLPNLEDKG QEHNRQDKGR LVLNADDENL VVLAPEIPVT KSWFSLHEDN ATLQQHKQKG
GAVCFVREQH LVYSVGNEES VIIAVNDIPM TLNGAALHNI QNALGAIALA KCLNVENEAI
KIALSNFASN VEDNPGRGNH FTVKSAEVIM DFAHNVHSME AMAVTTANMK AQRKFLMLSH
AGDRTDNEII NMTKTALKMK PDFIVAAELV PYLRGRTLGE IPQLIVDTAL AYGMKRSDIY
IADSPFKGAN YIVEQLREKD LALLMVLSER EEIIELLLDK AFFR