| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1840 |
|---|
| Symbol | |
|---|
| ID | 3520539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1891008 |
|---|
| End bp | 1892006 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637284302 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_268570 |
|---|
| Protein GI | 71280076 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.137202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACAATT TGAAAAAAAC AAGCAGAACT TGGCCAATAA TTTTAATGAT AATCGCTTTA
GTGATTTGGC TGATTTATAC TTTTTATCAA GCTTATCAGC CACTCCCTGA AAGAATACAA
GGTCAGATTG AGGCGCAAAA CTTTAGTATA TCTTCGAAAA TACCTGGTCG AATAGAGCAA
GTACTTGTCA GAAAAGGGGA TAAAGTATCA AGGGGACAGA TGATATTCAC CCTGTTAAGT
CCTGAGATAC AAGCAAAACT TCAACAAGCA AAAGCAGGTG AAAAAGCAGC TGGGGCATTA
GCTGAACAAG CGGAAAAAGG TGCAAGAATT CAGGAGATAG CCGCAGCTAA AACTCAGTGG
GAAAAAGCAA AAGCAGCGAA TGAGTTAATG GAAAAAACCT ATAACCGAGT CAATAACTTA
TTTAACGATG GTATTGTCGC CGAGCAAAAG CGTGATGAAG TTTATACGCA ATGGCAAGCG
GCAAAATATA ATGAAGGCTC CGCTTATCAA ATGTATGCCC TAACTAAAGA AGGCGCACGC
GACGAAGTAA AAAGAGCGGC AAAAGAAAAA GAGAATATGG CCGCTGGTGC TGTAGCCGAA
GTTGAGGCTT ACATTGCAGA TACTAAAATA GAAAGCTGGC ATAACGGTGA AGTCAGTCAG
GTATTACTTC AAGAAGGAGA ATTAGCCCCT CAAGGTTTTC CTGTCGTTAC TATTGTAGAT
ATAAATGACG CATGGGCCAT TTTTCATATT AGAGAAGATA AATTGAAAGA CTTCCCTAAA
GGGCAAAAAA TAGAAGTGGC CATTCCAGCG CTAGGCGAGG GGAATTTTAC TTTTGAAATA
TCGCATATTT CTGTTATGGG TGACTTTGCT ACTTGGCGAG CAACAGATAG CGCTCAAGGC
TTTGATATGA GAACGTTTGA AGTTGAAGCG AGACCACTTG AGCACATTCC TTTGTTAAGA
GTCGGTATGA CTGTATTACT AACCAGTGTG ACTAAATAG
|
|---|
| Protein sequence | MHNLKKTSRT WPIILMIIAL VIWLIYTFYQ AYQPLPERIQ GQIEAQNFSI SSKIPGRIEQ
VLVRKGDKVS RGQMIFTLLS PEIQAKLQQA KAGEKAAGAL AEQAEKGARI QEIAAAKTQW
EKAKAANELM EKTYNRVNNL FNDGIVAEQK RDEVYTQWQA AKYNEGSAYQ MYALTKEGAR
DEVKRAAKEK ENMAAGAVAE VEAYIADTKI ESWHNGEVSQ VLLQEGELAP QGFPVVTIVD
INDAWAIFHI REDKLKDFPK GQKIEVAIPA LGEGNFTFEI SHISVMGDFA TWRATDSAQG
FDMRTFEVEA RPLEHIPLLR VGMTVLLTSV TK
|
|---|
| |