Gene CPS_1732 details

Gene Information

• Locus tag: CPS_1732
• Symbol: pal
• ID: 3523080
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 1781427
• End bp: 1781981
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637284195
• Product: peptidoglycan-associated lipoprotein
• Protein accession: YP_268470
• Protein GI: 71282605
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
• TIGRFAM ID: [TIGR02802] peptidoglycan-associated lipoprotein

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.110246
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTTTA ATAACATAGT AAAATGCTTA GCAATTGCTT TACCTCTTAC CATTCTATCT 
GCTTGTAGCT CAAACTCTGA CACCGATGAG CAAAGCCAAG TCGATACTAA TGCCCAAATT 
ACTAAAAATG CGGAAGATGC TCAAAAAGCT CAAGAAGCAG TTCAAGTTAC AGCGGCAAAA 
CGTGCTGCAG AAATTGAAGA ACAAAAACGT CAAGAATTAG CGCAATTACG TTCAGAACAC 
ATCATTTACT TTGATTTTGA TGTTTCTAAC GTAAACGACC AGTTCTCAGC TATTTTAGAT 
GCACATGCTA AATTCTTAAA TGCTAACTCA GATGTAAAAG TATTAATTGA AGGTCATGCC 
GATGAACGTG GTACACCTGA ATATAATATT GCACTAGGCG AACGTCGTGC TAAGTCAGTA 
GTTACTTATT TAGAAAACAT GGGTGTTGCT GCAGGCCAAC TTACTGTAGT TAGCTACGGT 
GAAGAAAAAC CAATGGTTAA AGATCGTAGC GAAAATGCTT TCTCTAAAAA CCGTCGTGCC 
GTACTAGTTT ACTAA 

 

Protein sequence

MRFNNIVKCL AIALPLTILS ACSSNSDTDE QSQVDTNAQI TKNAEDAQKA QEAVQVTAAK 
RAAEIEEQKR QELAQLRSEH IIYFDFDVSN VNDQFSAILD AHAKFLNANS DVKVLIEGHA 
DERGTPEYNI ALGERRAKSV VTYLENMGVA AGQLTVVSYG EEKPMVKDRS ENAFSKNRRA 
VLVY