| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1731 |
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| Symbol | tolB |
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| ID | 3519634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1780014 |
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| End bp | 1781363 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637284194 |
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| Product | translocation protein TolB |
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| Protein accession | YP_268469 |
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| Protein GI | 71278150 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.693647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATTAT TATCAAACAT TGTATTTGGT GCCTTGATTG CATTCACTTC TGTTAAGGCA
ATGGCGGCAT TAGAAATTGT CATTACCGGG GGCGTAGATA GCGCAAGACC AATAGCTATA
ATCCCTTTCA ATTGGACTGG TACCGGCGAG CGACCAGAAT TATTATCAAA AGTTATTAGT
GATGATTTAT TACGTAGTGG CAAGTTTAGC CCTATTGCAA TAGATAGATT TCCGCAAACT
ATCTCGGATG CTAAAGCAAT TGATTACAGT GCTTGGGCTA ACTTGGGTGC TGAAGCCGTA
TTATTAGGTA ATATCAACGA AGTTGCACCA GGTCGTTATC AAGTCAGTTA CCAGTTAGTT
GACGTGATAC GCGGACAGAT CACCGGCGGT GAAACCTCAA TGCTCAGTAA TGGTGAATTA
GTTAATCCTA AGGATCATAT ATTGGCGCAA AGTAGCGCTA ACATACAACT GAATCAAGCA
CGTCGTTATG CACACAGTAT CAGTAATGTT ATTTATGAAA AACTTACGGG AAGTAAAGGC
GCATTTTTAA GCAAAATTGC CTATGTTATT GTTCGCGATC AAGGAAAGTA TCCATACCAA
CTCGCTTTTG CTGATTATGA TGGTTTTAAT GAACATGTAT TGTTAAGTTC TAAAGAACCA
TTAATGTCAC CATCTTGGCA TCCTAATGGT GACCAATTAG CGTATGTTTC ATTTGAAAAC
CGTCAAGCAC AAATCCACAG TATTGATATT TATACCGGCG TGAGAAAATC AATTAGCTCA
TTTAATGGTA TAAACAGTGC CCCACGATTT TCTCCTGATG GAAAGAGCAT GGCAATGGTC
TTATCAAAAG ATGGTAATCC AGATTTATAT GTTATGGAGT TAGCTACCAT GAAATTACGT
CGCATAACAC GTAATCGAGC GATAGATACT GAGCCGAGTT GGACTCCAGA TGGTAATTCA
TTGATATTTA GTTCAGAACG GGGTGGAAAA CCGCAGCTAT ATCGCGTAGA TTTAGCCGGG
GGGAAAGTAA GACGTTTAAC TTTTGATGGC GAGGTGAACC TAGGAGGTTC AGTAACACCT
GATGGTAAAC AACTGATTAT GGTCAACAGA ACGCGTGGTA AATATCGTTT AGCGAAGCAA
GAATTATCAT CTGGTTTATT TCAGGTGTTA ACCGAAACTC GTTTAGATGA ATCGCCAAGT
GTGTCACCAA ACGGTGGTAT GATCATATAC AGTACCTTAC ATAATAATCG ACAAGTATTG
GGTTTAGTGT CGGTAGATGG TCGCTTTAAA GCTAGATTGC CTGCACTTGA TGGTCAAGTG
AAAGCACCTG CTTGGTCACC ATTTTTATAA
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| Protein sequence | MKLLSNIVFG ALIAFTSVKA MAALEIVITG GVDSARPIAI IPFNWTGTGE RPELLSKVIS
DDLLRSGKFS PIAIDRFPQT ISDAKAIDYS AWANLGAEAV LLGNINEVAP GRYQVSYQLV
DVIRGQITGG ETSMLSNGEL VNPKDHILAQ SSANIQLNQA RRYAHSISNV IYEKLTGSKG
AFLSKIAYVI VRDQGKYPYQ LAFADYDGFN EHVLLSSKEP LMSPSWHPNG DQLAYVSFEN
RQAQIHSIDI YTGVRKSISS FNGINSAPRF SPDGKSMAMV LSKDGNPDLY VMELATMKLR
RITRNRAIDT EPSWTPDGNS LIFSSERGGK PQLYRVDLAG GKVRRLTFDG EVNLGGSVTP
DGKQLIMVNR TRGKYRLAKQ ELSSGLFQVL TETRLDESPS VSPNGGMIIY STLHNNRQVL
GLVSVDGRFK ARLPALDGQV KAPAWSPFL
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