| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1730 |
|---|
| Symbol | |
|---|
| ID | 3518353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1778968 |
|---|
| End bp | 1779882 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637284193 |
|---|
| Product | putative tolA protein |
|---|
| Protein accession | YP_268468 |
|---|
| Protein GI | 71278760 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3064] Membrane protein involved in colicin uptake |
|---|
| TIGRFAM ID | [TIGR02794] TolA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAC CTTATTTTAA AGCTGTGTGG CTAAGTATCG CATTGCATGT TGTTTTACTC
GTTGGTTTAT TGTCAGGAGA CTTTTCTTCA GAGCCTAAAC CGTTACCTAC GCCAACAAGC
CAATCAGCTG AGCCAATTAA GGCAGTAGTT ATTGATAAGG CAAAGTTTGA GCAAGCAGTA
AACAAAATTA AGAGACAGAA AATTAATGAG CGTGATGCTG AGAAAAAGCG ACTGAAAGCC
GTTGAAAAAC GTGCGTCAGA TGCTAAAAAG CGTCGTGTAC AAGAACAAGC ACGCATTAAA
AAATTAGAGA AACAACGTAA GCAAAAAGAA CAAGAAAAGA TTAAGGCAGA TAAAGCGGCT
AAATCATCAA AAGCTAAAGC AGCTAAAGCT GAAAAAGTAC GTAAACAAAA AGAGCAGGAG
AAACAAGTTG CTGAAAAGGC CGCTGCTGCT GCCAGAAGTA AACGTATAAA AGAAGAAGCG
GATGCCAAAA AAGCAGAGGA TTTACGCCTT AAAAAAATTG CAGATCGAAA ACGTCAAGAA
ATAGCAGCAA AAGAACAAGC TATTCAAGAT GCTATGTTAG CAGAGCAAAT GGCTGATGAA
ATGGCGACCC GTAATAAAGC AAGACACCAA CAAGTGATGA CGGAAGTACA ACGTTATTCA
GCGTTGATTC AACAAAGTAT TAATCAACGT ATGATTACAG ATCGCAGCAC TATGGCAGAT
AAATCTTGTC GATTAACGCT CACGCTGGCA CCTTCTGGCT TCGTTATTGA TGTAAAAGTA
GGGCAAGGCG ATAAAGTGGT GTGTGATGCC GCCAATATAG CCATTGGTAA AGCAGGTACG
TTACCAGTTT CTAAAGATCC TGAAGTATTT AAAGAAATGC GAGAAATTGC GGTTACGGTA
GAACCCAAAT TTTAA
|
|---|
| Protein sequence | MKSPYFKAVW LSIALHVVLL VGLLSGDFSS EPKPLPTPTS QSAEPIKAVV IDKAKFEQAV
NKIKRQKINE RDAEKKRLKA VEKRASDAKK RRVQEQARIK KLEKQRKQKE QEKIKADKAA
KSSKAKAAKA EKVRKQKEQE KQVAEKAAAA ARSKRIKEEA DAKKAEDLRL KKIADRKRQE
IAAKEQAIQD AMLAEQMADE MATRNKARHQ QVMTEVQRYS ALIQQSINQR MITDRSTMAD
KSCRLTLTLA PSGFVIDVKV GQGDKVVCDA ANIAIGKAGT LPVSKDPEVF KEMREIAVTV
EPKF
|
|---|
| |