| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1716 |
|---|
| Symbol | |
|---|
| ID | 3522087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1764813 |
|---|
| End bp | 1765283 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637284179 |
|---|
| Product | rRNA large subunit methyltransferase |
|---|
| Protein accession | YP_268454 |
|---|
| Protein GI | 71281615 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1576] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.962175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA CTTTATATGC CGTTGGTAGT AAAATGCCTG CATGGGTTAG CCAAGGGTTT
GCAGAATACA GCCGTCGTTT CCCTCGCGAT TTAAGTTTTA ACTTAGTTGA AATTCCTGCA
GGAAAACGTG GTAAAAATGC TGACATCAGC CGTATACTCG CTAAAGAAGG TGAGTTATTA
CTTGCTGCAA TTCCTAAGGG AAATCGTATA GTTACCCTTG AAGTTGAAGG GCAATCCTGG
ACAACACCAA AACTTGCCAA ACAGCTTGAA CAGTGGCAAC TTGATGGCAG AGATGTCGCA
TTACTTGTAG GTGGACCCGA AGGTTTAGCG CCCGCTTGTA TTAAAGCTTC AGAGCAAAAG
TGGTCATTAT CAGCACTTAC GCTACCTCAT CCAATGGTTC GAATACTCAT AGCTGAGAGC
TTGTATCGTG CTTGGAGCGT AAACACTAAC CACCCTTATC ATAGAGAATA G
|
|---|
| Protein sequence | MKLTLYAVGS KMPAWVSQGF AEYSRRFPRD LSFNLVEIPA GKRGKNADIS RILAKEGELL
LAAIPKGNRI VTLEVEGQSW TTPKLAKQLE QWQLDGRDVA LLVGGPEGLA PACIKASEQK
WSLSALTLPH PMVRILIAES LYRAWSVNTN HPYHRE
|
|---|
| |