| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1622 |
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| Symbol | |
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| ID | 3522767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1673170 |
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| End bp | 1676397 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637284085 |
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| Product | sensory box protein |
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| Protein accession | YP_268360 |
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| Protein GI | 71282294 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAAAC TATTTACTCC CGCTATAAAT TTAATGAACA ATTTGAGTTA CTCTCGCAAG
TTCATAGTAA TTGGAGGGCT TTCACTCCTT GCGTTATTGA TTGTTTCAAT TTCTTTAATC
TCTTATTTGT CTGGATCAAT TAGTACCGCT AATCAGCAGT TAACAGGATT ACATCAGACA
CAAAATACAT CAAGACTGAT CCAATCACTA CAACAACATA GAGGCATTTC AGCAGCTGTT
ATTGCAGGTG TTTATAATAG TGCTAATGGT CAGATATCAG TGAATAAAAA AGTAAATGAT
AACTTTCTAA AAATAAGCAG TGCATTGCCT TTCGAGTTAA AGAAAATAGC AAAATGGTCT
ACTATTATCG AGCAATGGAA ATATTTAAAT ACTAAGGGAA TTACTTTAGA ACTAGATGAA
AATTTTAATT TACATACAAA ATTAATTCAA AATATAAATT CTTTACAGCT CAGGGTGGCT
GACTATTACT ACTTGCTTGT AATGGATGAT CTTGATTCAT ATTATTTAAC AAATAGCTAT
TTATTCACAA TACCCATCAC GTTGGAGCTA CTCGGACAAG CTCGTGCCGT TGGTGCTTCA
TATTTAGTTA ATAAAAATAA GAAATCAAGA GAGAAAATAG ATAAATACTT CTCAAGTACG
ATTGTACCTC TGGCTGTATT TAAAGGAAAT ATGCACAAGG TTAAAAGGGA ATTGCTTTCG
GATGGAGAAA AAATTTCTGC TCAAGCGCTA ATTCAAACAA TTGAGCAGCA TATCCAATTA
ACCTTAGATG GGATCTTAGC TGATTCAACT TCTTTGAGTT CTCTTGAGCT TTATAAACTA
TCTACTTCCG CCATTGATAT AGGGTATCAA TTTTTAGATA ACTCACTTTC TTTTACACTA
AGTAATTTGC TTAAAAACCG TGTTAAACAA GCAAACACTG AATTAATTGT GAGCATTGGC
TTTTCGTCAA CGCTATTTCT TATTGTTCTG TACTTTTTAA TAGGATTGTA TTTCTCAACA
ATAAGAAGTA TCAATTATTT AACTAAAGTT ACGGGTAAGT TTTACGGTGG TGATCTTGAT
GCTCGCGTAA CGCTTTATAC TCGTGATGAG CTCAATAGTA TAGCGCTCGG ATTCAATGAG
ATGGCTTCAT CCTTTCAAAA TTTACTGATT GAGAAAGAAG AAATAAGCAC AAGACTGCTC
GCTATTATTG ATAATTCACC CATAGGAATT TGGTTTACAG GTACGGATGG TCGTTATCAT
TTCGTTAATA AGACATTTTG TAATTTAGTG GGAATAGAAG AAGAAGATAT GCTTAATACA
CCTTCATCTA ATTTAGCCGA GTTATTAGGA AGTGAAATAG CACATAATTG CTTAGACTCT
GATAGAGCTG CTTTAGGACA AGATTTGGCT CATGTTTCTT ATGAAACAAT CCCCCGTTTA
AATGCAAAAC CATACCTTCT TGAAATCACT AAAGTAAAAT TGAAAAATAC ACGAGGTAAG
GTTGTTGGCT TGATCGGTAT CAGCAAAGAT ATAACAAATA AACGTCAACA GGAAGATGAT
TTAAAGCTTG CAGACATAGT ATATCAAAAT AGTTCTGAAG CGATGATGAT TACCAATATT
AATAATGAGA TTATTGCGAT TAATCCTGCT TTATCTGATA TTACGGGTTA TAGCACAAGT
GAATTAATCG GGAAAGATCC TAAGATATTT AGTTCTGGTA AACAAAGCCT ACAATTCTAT
CAGTCAATGT GGGAAGAAAT AAAACGAACC GGAACATGGC AGGGGGAAAT TTGGAATACC
AGAAAAAATG GGGATGAGTA TCCTGAATGG CTTTCAATTA ACACCATTTA TGATGATGAT
GGCAAGGTTT TCAGACGAAT TGCATTGTTT TCAGATATAA CAGAAAAGAA AAAGAAAGAT
GCACTGATAT TAAGGCAAGC TAATTATGAC AGCCTGACTA ATCTGCCCAA CCGAAGAATG
TTTATTGATA GGTTGGAACA AGAAATTAAG GTTTCTCATC GTAAGAAGCA AAAATTCGCT
CTAATTTTCA TTGACCTAGA TAACTTTAAA AATATAAATG ATACTAGGGG TCATGTCTTT
GGTGATCAAT TACTTACTGA GGCTGGAAAA CGAATTACTC ATTGTGTTCG AGAAGTAGAC
ACAGTTGCAC GATTAGGTGG TGATGAATTT ACAATTCTTT TGTCTGACTT ATCAGAAATA
TATAATGTTG AATCTATTTG TCAGAAAGTA TTACTCGCCT TAAGCCAACC TTTTTGTATT
TCTAAGTTGT ATACATATAT ATCTGCTAGT TTAGGGGTCA CAATCTATCC AAATGATGCA
AGTACCACGT TGGAACTACT AAAAAATGCT GACCAAGCCA TGTACCTTGC CAAGGATCTC
GGTCGTAATC AATTTTGTTA TTTTACCGCA TCAATGCAGG AGCAAGCTCA AAATAAGTTA
GAATTAATGA ATGACTTGCG TACAGCAATT AGCTTGAATC AACTCGCCGT GTTTTATCAA
CCTATTATTG AATTACAGAC AGGTATTATT CGTAAAGCAG AAGCCCTTTT ACGCTGGAAA
CATCCCGTTC GAGGCATGGT GAGTCCCGCA GAATTTATTC CGCTAGCAGA AGAATCTGGA
TTAATCATAG AAATAGGTGA TTGGGTATTT AAACAAACCG TTCAGCACAT TAAAGAATGT
AAAAAACAGC TTGGTTTAGA TATACAAATC AGTATCAACA AATCACCCGT ACAATTTAGA
GAAACGGTAA GTCAATTAGA TTGGTTAACC TACCTTACCG AAAATCAATT ATCAGGGAAA
AACATTGTTA TTGAAATAAC CGAAGGTCTG TTAATGAATA ATAATACCAG CACAATGGAG
AAGCTATCTC GGCTTAGAGC TGCTGATATT AAACTGTCTA TGGATGATTT TGGAACAGGG
TATTCATCAC TTTCGTACTT GAAAAAATTT GAGCTTGATT ACCTAAAAAT AGATCAGTCA
TTTACTAAAA ACTTAGCGCA GGGTTCAGAG GATATGATTT TGTCAGAAGC TATTATCACA
ATGGCTCAGA AGCTAGGATT AAAAGTGATA GCTGAAGGTA TCGAAACAGA GGAGCAAAGG
AAATTACTCC TTGATTCTGG ATGTGATTAT GGTCAAGGAT ATTACTTCTC AAGGCCTATA
CCAGCAGATG ATTTTTTACA GCTATTAGCT CGAACTTCTG AGATATAG
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| Protein sequence | MKKLFTPAIN LMNNLSYSRK FIVIGGLSLL ALLIVSISLI SYLSGSISTA NQQLTGLHQT
QNTSRLIQSL QQHRGISAAV IAGVYNSANG QISVNKKVND NFLKISSALP FELKKIAKWS
TIIEQWKYLN TKGITLELDE NFNLHTKLIQ NINSLQLRVA DYYYLLVMDD LDSYYLTNSY
LFTIPITLEL LGQARAVGAS YLVNKNKKSR EKIDKYFSST IVPLAVFKGN MHKVKRELLS
DGEKISAQAL IQTIEQHIQL TLDGILADST SLSSLELYKL STSAIDIGYQ FLDNSLSFTL
SNLLKNRVKQ ANTELIVSIG FSSTLFLIVL YFLIGLYFST IRSINYLTKV TGKFYGGDLD
ARVTLYTRDE LNSIALGFNE MASSFQNLLI EKEEISTRLL AIIDNSPIGI WFTGTDGRYH
FVNKTFCNLV GIEEEDMLNT PSSNLAELLG SEIAHNCLDS DRAALGQDLA HVSYETIPRL
NAKPYLLEIT KVKLKNTRGK VVGLIGISKD ITNKRQQEDD LKLADIVYQN SSEAMMITNI
NNEIIAINPA LSDITGYSTS ELIGKDPKIF SSGKQSLQFY QSMWEEIKRT GTWQGEIWNT
RKNGDEYPEW LSINTIYDDD GKVFRRIALF SDITEKKKKD ALILRQANYD SLTNLPNRRM
FIDRLEQEIK VSHRKKQKFA LIFIDLDNFK NINDTRGHVF GDQLLTEAGK RITHCVREVD
TVARLGGDEF TILLSDLSEI YNVESICQKV LLALSQPFCI SKLYTYISAS LGVTIYPNDA
STTLELLKNA DQAMYLAKDL GRNQFCYFTA SMQEQAQNKL ELMNDLRTAI SLNQLAVFYQ
PIIELQTGII RKAEALLRWK HPVRGMVSPA EFIPLAEESG LIIEIGDWVF KQTVQHIKEC
KKQLGLDIQI SINKSPVQFR ETVSQLDWLT YLTENQLSGK NIVIEITEGL LMNNNTSTME
KLSRLRAADI KLSMDDFGTG YSSLSYLKKF ELDYLKIDQS FTKNLAQGSE DMILSEAIIT
MAQKLGLKVI AEGIETEEQR KLLLDSGCDY GQGYYFSRPI PADDFLQLLA RTSEI
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