| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1548 |
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| Symbol | dapD |
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| ID | 3523324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 1590991 |
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| End bp | 1591830 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637284011 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_268290 |
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| Protein GI | 71277820 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAGATT TAAAACACTT AGCTAGTGTA ATTGAACAAG CCTTTGAAGA AAGAGCCAGT
ATTTCTCCTG CAACCGTTTC AAGTGAGATT AAAAACGCAG TGCTTGATGC GTTAGCCGCA
TTAAATAACG GCAGTGCACG CGTAGCAGAA AAAGTAGATG GCAGCTGGCA TGTAAACCAA
TGGCTTAAAA AAGCGGTATT ACTTTCTTTT CGTATATGGG ATAACCAAGT AATTGATGGT
GCAGAAAGTA CTTTTTTTGA TAAAGTACCG ATGAAGTATG AAGGTTATAC GCAAGCAATG
TTTGAAGCTG ACGGTGTTCG TGTAGTCCCT GGCGCAAGTG TTCGTACTGG TAGTTTTATT
GGTAAAAATG TTGTGGTAAT GCCGAGTTTT GTCAATATTG GCGCTTTTGT CGATGAAGGC
TGTATGGTAG ATGCTTGGGC AACAGTGGGA TCTTGTGCAC AAATTGGTAA AAATGTGCAT
TTATCTGGCG GTGTCGGTAT TGGTGGAGTG TTGGAGCCTT TACAAGCTGG ACCAACCATC
ATTGAAGATA ATTGTTTTAT TGGCGCACGT TCAGAAATCG TTGAAGGCGT TATAGTAGAA
GAAGGTGCAG TAATTTCTAT GGGCGTCTAT ATCGGCCAAA GCACTCGTAT TTTTGACCGT
GAAACAGGTG AGGTACATTA TGGACGAGTA CCTGCTGGCT CAGTGGTAGT GCCAGGTAAT
TTACCTTCAG CTTGTGGTAC ATACAGTTTA TATGCTGCAA TTATCGTGAA GAAAGTTGAC
GCAAAAACGC TAGCTAAAGT TGGTATCAAC GAATTATTAC GCGCAGTATC AGAAGAGTAA
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| Protein sequence | MTDLKHLASV IEQAFEERAS ISPATVSSEI KNAVLDALAA LNNGSARVAE KVDGSWHVNQ
WLKKAVLLSF RIWDNQVIDG AESTFFDKVP MKYEGYTQAM FEADGVRVVP GASVRTGSFI
GKNVVVMPSF VNIGAFVDEG CMVDAWATVG SCAQIGKNVH LSGGVGIGGV LEPLQAGPTI
IEDNCFIGAR SEIVEGVIVE EGAVISMGVY IGQSTRIFDR ETGEVHYGRV PAGSVVVPGN
LPSACGTYSL YAAIIVKKVD AKTLAKVGIN ELLRAVSEE
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