| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1540 |
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| Symbol | dbpA |
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| ID | 3521612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1582295 |
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| End bp | 1583701 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637284003 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | YP_268282 |
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| Protein GI | 71281141 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTACTA ATACAACTAC TTCATCGTTA GCTTTTTCTT CGTTGAGCTT AAAACAGGAT
TTAGTTAAAA ACTTATCGTC GCTTGGCTAT GAGCAAATGA CACCTATTCA AGCTAAAACC
TTACCTGAAT TGCTTAAAGG AAAAGATGTT ATTGGCGAAG CGAAAACAGG CTCAGGTAAA
ACGGCTGCTT TTGGTTTAGC ATTACTTAAC AAATTAGAAG TTAAAAAGTT TCGCATTCAA
TCCATGGTTA TTTGTCCAAC CCGAGAACTG GCTGACCAAG TTGCGAAAGA GTTGAGAAAA
CTAGCGCGTG GTATTCATAA TATAAAAATA TTGACACTTT GTGGCGGAAC CCCTTTTGGT
CCACAAATTG GTTCTTTAGA GCATGGGGCA CATGTTATTG TTGGTACTCC AGGACGCCTT
GAAGAACATG TTATAAAAGG CACTTTACAA TTAGATAACT TAAACTTATT AGTGCTCGAT
GAAGCTGACC GTATGCTAGA AATGGGCTTC CAAGCCGCAC TTGATAATAT TGTTGGACGT
ACACCACTTG ATCGTCAAAC ATTACTTTTC AGTGCTACCT TTCCTGACCA AATTAAGTCT
ATTAGCGAAA GTATCATGAC AGATCCTGTG ATGGTTAAAA TCGCTTCAAG TGAAGACCAA
TCAACTATCA GTCAAAAATT CTTTAAAGTG GGTAATGATG ACGATCGCCT AGACGCGTTA
CGTTTATTGT TACTAGGTAA TCAAGTTGAA TCGACCGCTA TTTTTTGTAA TACCAAAAAA
GAGACCCAAC AAGTCGCTGA TGCCTTACAC TTTGATGGTT TTAGCGTATT AGCGTTACAC
GGCGATTTAG AGCAACGCGA TAGAGACCAA ACATTATTAC GCTTTGCCAA CAAAAGTGCT
TCAATTCTTG TTGCGACAGA CGTTGCTGCA CGAGGCTTGG ATATTGATAG CTTAGACTTA
GTTATTAATT ATCACATTGC CCGCGATAGT GAAGTGCATG TGCATAGAAT AGGCCGAACA
GGTAGAGCAG GCAGTACGGG TATCGCTTAT TCACTGTTTA GTGACAAAGA AAGTTATAAA
GTTGGCTTAC TAGAAGACTA CCTTGAAGCT GTTATTACCC CTGAGCCATT GCCTTCATTA
GCGGTACTTT CCAATGAACG TCCGCAAGCT AAAATGGCAA CCATTCAAAT TGATGGCGGT
AAAAAGCAAA AAGTTAGAGC TGGAGACATT TTGGGCGCAC TTACCGGCGA TAATGGTGTG
CAAGGTTCGC AAGTTGGCAA AATTTCAGTG CTTGATAATA AGGCCTATGT TGCCGTTACT
AAAGCGGCTT TGAACTTAGC CTTGAAAAAA ATATCTAAGG GCAAAATGAA AGGCCGTACC
TTTAATGCTC GCCATTTAAC TAATTAG
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| Protein sequence | MSTNTTTSSL AFSSLSLKQD LVKNLSSLGY EQMTPIQAKT LPELLKGKDV IGEAKTGSGK
TAAFGLALLN KLEVKKFRIQ SMVICPTREL ADQVAKELRK LARGIHNIKI LTLCGGTPFG
PQIGSLEHGA HVIVGTPGRL EEHVIKGTLQ LDNLNLLVLD EADRMLEMGF QAALDNIVGR
TPLDRQTLLF SATFPDQIKS ISESIMTDPV MVKIASSEDQ STISQKFFKV GNDDDRLDAL
RLLLLGNQVE STAIFCNTKK ETQQVADALH FDGFSVLALH GDLEQRDRDQ TLLRFANKSA
SILVATDVAA RGLDIDSLDL VINYHIARDS EVHVHRIGRT GRAGSTGIAY SLFSDKESYK
VGLLEDYLEA VITPEPLPSL AVLSNERPQA KMATIQIDGG KKQKVRAGDI LGALTGDNGV
QGSQVGKISV LDNKAYVAVT KAALNLALKK ISKGKMKGRT FNARHLTN
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