| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1536 |
|---|
| Symbol | |
|---|
| ID | 3523108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1576958 |
|---|
| End bp | 1578208 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637283999 |
|---|
| Product | AcrA/E family efflux transporter MFP subunit |
|---|
| Protein accession | YP_268278 |
|---|
| Protein GI | 71282633 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGC GCTTTTTTAA AAACACTACC CGATCTAACC TAACAACGAG TAAGTTTGTA
GTTTTTGGAC TTTTATCCCT AACACTTACG GCTTGTAGTA AGGAAGAAGT TAAGGTTAAA
CCTCCAGCAC CTGCAGTTTC TGTCTACTCA ATCCAATCCC AATCTATTGG CGGCTATCGT
GAATTTGTCG CACGTACAGA AGCGTCTAAA GAAGCTAATT TACGAGCTCG AGTTGAAGGC
GAATTACTTG AACGTCGTTT TCGTGAGGGG AGTTTTGTTG AAAAGGGTCA AGTGTTATTA
AGAATAGATC CAGCTGCCTA TGAAGCGGCC TTATCATCTG CAAAAGCTGA TTTAAGTTCG
AAAGAGTCTG GTGAAGAAAA TGCCAAACGT AATTTAAAGC GAGCAAATGA TCTTATTAAT
GATGGTTACA TTTCACAATC AGACTTTGAC CGATTAACAA CAGAAGAGTC ACAAGCAAAA
TCGGCTGTTA AGTCTGCACA AGCTGCACTT GAACAAGCTG AACTTGATTT AAGCTACACC
ACAATCACAG CCCCTTTTAG TGGCCTTATT GGTAAAGTGA ATTACAACGT GGGAAATATT
GTTAGCCCTA CGAGTAATAC TTTGGCTACT CTCATTATTA GTGATCCTAT TTTTGTTAGT
TTTCAAGTGG AAGAAAGCAC CTACGTCTCA TATCAACAAG AGCATCAGGG GTCGAATAGT
GACGAAGGAG GTGAATTTGA TATCTCTTTG CGCTTACCTA ACAATTCAGA ATATCCAGAG
CATGGAAAGT TAGATTTTGC TGATACTAAA ATTTCCGAAG GCATGGGAAC AGTCGAGCTG
AGAACTGTTT TCCCGAATCC TCATAACATC ATTATCCCAG GCTTGTTTGT TACCTTGATT
CTTGAAAGTA AAAGTAAAGA AGAAATGGCG TTAATTCCAC AAGCGGCAGT ACAAGAAGGC
CAACAAGGAA AGTTTGTTTT AATTGTCGAT GAAAATAATA CAGTAAAACA ACGTCACGTA
GTGCTAGGTA GAAGAATTAA TGCCATGTGG GTTGCAGAAA AGGGTGTCTC TATTGGTGAA
AAAGTCATCG TTGAAGGATT ACAAAAAGTT CGTTCTGGAG TTGAAGTTAG AGGCGTTGAA
AAGCATGTTG ATCCAATCGT CGGTACAATA TCAGATATTG ATGATAAATC AGTGGACTCT
TCAAAAGTGA CTGAACCAAC CATTAGCCCT AGTGCTACAA CTGATAAGTA A
|
|---|
| Protein sequence | MLKRFFKNTT RSNLTTSKFV VFGLLSLTLT ACSKEEVKVK PPAPAVSVYS IQSQSIGGYR
EFVARTEASK EANLRARVEG ELLERRFREG SFVEKGQVLL RIDPAAYEAA LSSAKADLSS
KESGEENAKR NLKRANDLIN DGYISQSDFD RLTTEESQAK SAVKSAQAAL EQAELDLSYT
TITAPFSGLI GKVNYNVGNI VSPTSNTLAT LIISDPIFVS FQVEESTYVS YQQEHQGSNS
DEGGEFDISL RLPNNSEYPE HGKLDFADTK ISEGMGTVEL RTVFPNPHNI IIPGLFVTLI
LESKSKEEMA LIPQAAVQEG QQGKFVLIVD ENNTVKQRHV VLGRRINAMW VAEKGVSIGE
KVIVEGLQKV RSGVEVRGVE KHVDPIVGTI SDIDDKSVDS SKVTEPTISP SATTDK
|
|---|
| |