Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1519 |
Symbol | fliA |
ID | 3522182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1562374 |
End bp | 1563093 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637283982 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_268261 |
Protein GI | 71281710 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGTAAAAG TGAATAGCTA TAATAATCAA ATTGATAAAG CAGCTCTTCT TGAACAACAA ACTGTTTTAG TCAAGCGCAT TGCTTATCAT CTTTTAGCAA GATTGCCAGC AAGTGTTCAA GTTGATGACT TGATACAGTC AGGAATGATT GGTTTATTTG AAGCGGCAAA TAATTTTGAT AACACTAAAG GCGCAAGCTT TGAAACATTT GCTGGTATCA GAATCCGTGG CGCTATGCTT GATGAAATAC GCCGAGGTGA TTGGACGCCG CGATCTGTTC ATAAAAATAG CAGGATGATC AGTGAAGCGA TAAAGCAACT TGAAGCACAA TTAGGCCGAG ATGTTTCTGA TGTTGAAGTT GCTGAAAAAT TAGATATTTC ACTGAAAGAT TACCATCAGA TATTGAGTGA AGTAAGTACA GGAAAAATAC TTGGTATTGA TGATCTTGGT GTTAATGAAG ATGCTATTAA GCCAAGTGAT GACTATATTG GAGATGATCC ATATCAAAGT ATTGAGCGAA TAGCTTTTAA AAAAGGCTTA ACTCAATGCA TTAAGTCTTT ACCGGAACGA GAAGCTCTAG TACTGTCTTT ATATTATGAT GAAGAATTGA ATTTACGAGA GATCGGGCAA GTACTCGATG TGAGTGAATC ACGGGTAAGT CAAATTCATA GTCAAGCGAT GCATCGTTTA AAAGCACGTA TGCAATCTTG GCAAAGTTAA
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Protein sequence | MVKVNSYNNQ IDKAALLEQQ TVLVKRIAYH LLARLPASVQ VDDLIQSGMI GLFEAANNFD NTKGASFETF AGIRIRGAML DEIRRGDWTP RSVHKNSRMI SEAIKQLEAQ LGRDVSDVEV AEKLDISLKD YHQILSEVST GKILGIDDLG VNEDAIKPSD DYIGDDPYQS IERIAFKKGL TQCIKSLPER EALVLSLYYD EELNLREIGQ VLDVSESRVS QIHSQAMHRL KARMQSWQS
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