| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1447 |
|---|
| Symbol | |
|---|
| ID | 3521011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1488754 |
|---|
| End bp | 1490037 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637283910 |
|---|
| Product | putative D-amino acid dehydrogenase, small subunit |
|---|
| Protein accession | YP_268189 |
|---|
| Protein GI | 71280545 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.272098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG TCGTTGATCA AGAAGGGAAT AACAAACAAC AAACCGTTGC GGTTATCGGT
GCTGGAATTA TCGGTATAAA CTGTGCGTTA GAATTACAAA GCTTAGGCTA TCAAGTGACC
TTACTTGATA AAGAAGGCAT TGGTTTAGGG TGCTCTAAAG CTAATGCTGG TCATTTTGCT
ACTGAACAAG TCTTTCCACT TGCTGAGTTT TCATTGTTAT GGCAAATGCC AAAATTACTG
TTTGATCCGC TTGGGCCTGT CGCTTTATCT GCCAAGCACT TCATCAAAGC CATTCCGTGG
TTTATGCAGT TTTTTAATAA TATGCGCCCA ACACTACGTA ACAAAAACAA GAAAGCCCTA
CAAGCACTCA ACAAAAATGC CATCCACCAT TATACAGCAC TACTGAAAGC TGCTGAGGCC
GAGCATTTAA TTAGCTTAGA TGGTTCGTTA CTAGTCTTTG AAACCAATGA CCGAACTAAA
GTTGAGCTTA TGTATCAGCA TTATTTAGCT GCGGGCATTG CGGTAAAACT TTTAGATAAA
AGGCAAACCC TTGAGTTAGA GCCCAATTTA AGTAACAACA TCAACTACTC ACTATATTTT
ACTGATGTTG CCCATACAAT TGACCCGCTA GCACTGAGCA AAACATTGGC TGAGTTTGCG
ATGTGTAAAG GCATGACCTT TCAACAAACA GCCGTAACTT CTGTCACTCA GACACAGTCT
GGAGTCACCG TAGAGATAGA TGAACAACAT TTACATGTTG ATCACTGCGT TATTGCATGT
GGCGCGTGGT CAAAAAAGTT ACTCAATGGC TTAAACTATC ATTTACCTAT CGAAGCTGAG
CGAGGATATA GTTTGAGTTT GCCCATTTCA GCAGCAGCCA GCGCCCTTTT GTCTCGGCCC
GTTGCTTCTG CCGAACGTCG CTTTATTATT ACGCCGATGG GTAAAACATT AAGGTTAGCA
GGTACTGTTG AATACGCGGG GCTGAACGCT CCGGCAAATT ATAAGCGTGC TGAAATGTTA
AAAGGTAATG CCGCTTATAT TTTAAAGAGA TTGCCTGAAA ATGAAGAGAA GCAAGAAGCT
TGGATGGGGT GTCGTCCATC ACTACCTGAC TCTTTACCTG TAATTTGCCA AGCGCCAAAT
CATGATAAAA TTTTTTTTGC TCTTGGGCAT CAGCACTTAG GGTTAACCCA AGGAGCAATA
ACGGGGAAAC TTATCGGTCA GTTAGTGACA GGGCATTCAC CTGAAATTAA TATAGACCCT
TTTTGTATCC GCCGCTTTAA CTAA
|
|---|
| Protein sequence | MSTVVDQEGN NKQQTVAVIG AGIIGINCAL ELQSLGYQVT LLDKEGIGLG CSKANAGHFA
TEQVFPLAEF SLLWQMPKLL FDPLGPVALS AKHFIKAIPW FMQFFNNMRP TLRNKNKKAL
QALNKNAIHH YTALLKAAEA EHLISLDGSL LVFETNDRTK VELMYQHYLA AGIAVKLLDK
RQTLELEPNL SNNINYSLYF TDVAHTIDPL ALSKTLAEFA MCKGMTFQQT AVTSVTQTQS
GVTVEIDEQH LHVDHCVIAC GAWSKKLLNG LNYHLPIEAE RGYSLSLPIS AAASALLSRP
VASAERRFII TPMGKTLRLA GTVEYAGLNA PANYKRAEML KGNAAYILKR LPENEEKQEA
WMGCRPSLPD SLPVICQAPN HDKIFFALGH QHLGLTQGAI TGKLIGQLVT GHSPEINIDP
FCIRRFN
|
|---|
| |