| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1355 |
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| Symbol | |
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| ID | 3518713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 1396104 |
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| End bp | 1399262 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637283819 |
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| Product | hydrophobe/amphiphile efflux-1 family protein |
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| Protein accession | YP_268098 |
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| Protein GI | 71278690 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCTC GTTATTTTAT TGATCGACCT ATCTTTGCTT TTGTCATTTC TATTTTTATT
GTTTTAGCTG GATTGGCTGC TATGCGCAGT TTATCTATCG CACAATACCC AGAAATGTCG
CCACCCGTTG TACAAGTTAC CGCTGTGTAT CCTGGTGCAT CTGCTGAAGT ATTAGAACAA
ACAGTTGCTA CGCCTTTAGA AAATGCAATT ACAGGCGTTG AAGGCATGAT GTATATGTCC
TCAACATCAA CCAGTGCTGG TGCAACAACC ATCACGGTTA CCTTTGAAAT AGGTACAGAC
CCAGACCAAG CTTCCGTTAA TGTTAACAAC CGTGTTAAAC AAGTAGAAGC ACGTTTACCT
GAAGAAACAC GCCGTCAAGG TGTTGTGGTT GCTAAAGGCT CATCAAGCTT TTTACATGTA
CATGCTTTTT ACTCACCTGA TGATAGCCGC GAAGCATTAT GGACTTCTAA TTATGTAACG
TTAAACATTA TTGATAAAAT CAAACGTATT CCTGGCACGA CTAGCGTACA AATTTTTGGC
GCAAAAGATT ATGCCATGCG TATTTGGTTA CGTCCTGATG TGATGAGCCA GCTTGGCGTT
ACTGTTGAAG AGATTAGCAG TGCGGTACGT GAACAAAACT CTCAATACGC TGCCGGTAGA
ATTGGTGCGA CACCGACTTC CGTTAGTCCA CAATCATTGG TATACAGTGT AAAAGTACAA
GGGCGATTAA GCACGGCAAA AGAGTTTGAA GATATCATTA TTCGGGCAAA TAACGATGGT
AGTTCGCTGC GTTTGAAAGA TATTGCGCGC GTCGAATTAG GCTCAAAAGA TTATGACTTT
GATGGCCGTA TCAACGGTAA AAAAGCAGTA CTACTGGGTA TATTCTTACA ACCCGGTGCT
AATGCCCTTG ATGTTGCCGA CGAAGTTAAT GCCACCATTG CTGAATTAGA GACCCGTTTC
CCTACTGGGC TCGAGCATTT GTTGCCATAC GACACCACCC GCTTTGTAAA AGTCTCTATT
CGAGAAGTAT TGAAAACTCT TGGCGAAGCT ATGCTACTGG TATTCTTAGT GGTTTTTATC
TTTTTACAAA ATTGGCGTGC TACCTTAATT CCTATTATGG CCGTACCAGT TTCTTTGTTA
GGCACCTTTG CTGGCCTGTA TATGCTGGGT TATTCCATTA ATACGTTGAC CTTATTTGGT
ATGGTGTTAT CCATTGGTAT TGTGGTTGAT GATGCAATCG TTGTACTTGA AAACGTAGAA
CGCATTATGC ATGAAGAAGA TGTCTCAGTT CGTGACGCAG CTATCAAAGC GATGAAAGAA
GTAAGTGGTC CAGTCGTTGC CATTGTACTG GTGTTATGTT CAGTCTTTGT ACCTATCGCC
TTTTTAGGTG GCTTAACCGG TGAATTATTT CGTCAATTTG CTATCACGAT ATCAATCTCG
GTAAGTTTAT CAGGCTTGGT GGCCTTAACC ATGACACCTG CCTTATGTGT TTTAGTATTG
AAACATGAAG ACAAAAAAAC CAACTTCTTC TTTAACGGTT TTAATCGCTT TTTCAATAAA
GTGACTGGGC ACTATGTCAC GGGTGTAAGT TTCTTCCTTC GCCGTGGTTT ATTAGCCTTG
ATGCTTGTTC TTGGCATGGT CGTGATCACC GCAAATATGT GGTTAAAAAC GCCCAGCTCT
TTAGTACCTG ATGAAGACCA AGGTTTTTAC ATTTCTGCGG TATTTTTACC TGATGGTGCC
TCATTACAAA GAACCAAAAA AGTAGTCGAT GAAGTCATAG CAGCAATAGA ATCAAACCCC
GCTAATGAAA ATGTAATTTC CTTTACTGGT TTTGACTTTC TAGGTGGTGG TTATAAAAAT
AATGCTGCCA CTATTTTTGT CACCCAAAAA CATTGGGATG ATAGAGAAAT AAGCACTCAA
CAATTGGTAG GTGAGTTGTT TATGAAAACC GCTAATATCA ATGAAGCCTT AGTATTAGCT
TTTAATCCAC CAGCGATACC TGGTTTAGGT AATACCGGTG GTTTTGAGTT CTATCTGCAG
AACCGTGGTG ACGGTGGTGT CGCTAAGTTA AAACAAAGTA TGCAAGCGAT GATGGGCGCT
GCTCAGCAAA GTCCAATACT TGCTGGGGTG CAAACATTAT GGCGTTCAGA CTCACCACAG
CTGACGGTAG AAATAGATCG TGAACAAGCG CGCGCTATGG ATATTCCTAT TAACAATGCT
TTTAATGCCT TGGCTGGAAC CATGGGAACT TATTATCTAA ATGACTTCAA TAAATTCGGT
CGAACATGGC AGGTACTGAT GTCGGCAGAG CCCGAGTTTA GAATGAGTCC TAAAGATATA
TCGCGTATTT ACGTTAAAAG TAATGGCGGT GAAATGGTAC CTATCTCTGC CTTTGCCGAA
ATTAATTACA GCAGTGGTCC TGATAGTTTA GACAGATACA ATAACTTGTC TGCGGTGAAA
TTATTAGGTA GTGCAGCGCC AGGGTATAGC TCAGGCCAAG CGATTGCCGA AATAGAGCGG
ATTGCCAACG AAGTATTACC ATCAGACATG AGTTATGAAT GGACTGGGAC TGCTTACCAA
GAAAAAAGAA GTTCTGGCTC TACCGCCATT GCATTAGGCA TGGCCGTGAT TATGGTATTT
TTGATTCTAG CTGCTCTTTA TGAGCGTTGG TCTCTGCCGT TATCAGTGCT GTTGGCTTTA
CCTTTTGGTA TATTTGGTGC GTTAGTTTCT GTTTGGATTG CCGGCATGAC CAGTGATGTC
TATTTCCAAA TTGGCTTAGT CACCTTACTT GGTTTAGCCA GTAAAAATGC CATTTTAATT
GTTGAATATG CCTTAATGAA AAAACAAGAA GGCTGGACGA CTGGTGCTGC GGCATTAGAA
GCCGCCCGCT TACGTTTTAG ACCCATAATT ATGACATCGC TTGCCTTTAT TTTAGGTGTT
GTTCCCTTAG CGTTAAGCTC AGGTGCCGGT GCAGGTGCTC GTCATAGTGT TGGTACAGGT
GTGATGGGTG GCATGATAGC GGCAACATTT TTAGCCATCT TCTTTGTGCC GTTATTCTTT
TATTGGTTAA CCGAACGTAA GATATCTGAA AATAGAAAAC AGCAAGCCAT TACCGATGAA
ATAGCTCAGC ACCATGAACA TGAGCTAAAT TCTAAGTAA
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| Protein sequence | MFSRYFIDRP IFAFVISIFI VLAGLAAMRS LSIAQYPEMS PPVVQVTAVY PGASAEVLEQ
TVATPLENAI TGVEGMMYMS STSTSAGATT ITVTFEIGTD PDQASVNVNN RVKQVEARLP
EETRRQGVVV AKGSSSFLHV HAFYSPDDSR EALWTSNYVT LNIIDKIKRI PGTTSVQIFG
AKDYAMRIWL RPDVMSQLGV TVEEISSAVR EQNSQYAAGR IGATPTSVSP QSLVYSVKVQ
GRLSTAKEFE DIIIRANNDG SSLRLKDIAR VELGSKDYDF DGRINGKKAV LLGIFLQPGA
NALDVADEVN ATIAELETRF PTGLEHLLPY DTTRFVKVSI REVLKTLGEA MLLVFLVVFI
FLQNWRATLI PIMAVPVSLL GTFAGLYMLG YSINTLTLFG MVLSIGIVVD DAIVVLENVE
RIMHEEDVSV RDAAIKAMKE VSGPVVAIVL VLCSVFVPIA FLGGLTGELF RQFAITISIS
VSLSGLVALT MTPALCVLVL KHEDKKTNFF FNGFNRFFNK VTGHYVTGVS FFLRRGLLAL
MLVLGMVVIT ANMWLKTPSS LVPDEDQGFY ISAVFLPDGA SLQRTKKVVD EVIAAIESNP
ANENVISFTG FDFLGGGYKN NAATIFVTQK HWDDREISTQ QLVGELFMKT ANINEALVLA
FNPPAIPGLG NTGGFEFYLQ NRGDGGVAKL KQSMQAMMGA AQQSPILAGV QTLWRSDSPQ
LTVEIDREQA RAMDIPINNA FNALAGTMGT YYLNDFNKFG RTWQVLMSAE PEFRMSPKDI
SRIYVKSNGG EMVPISAFAE INYSSGPDSL DRYNNLSAVK LLGSAAPGYS SGQAIAEIER
IANEVLPSDM SYEWTGTAYQ EKRSSGSTAI ALGMAVIMVF LILAALYERW SLPLSVLLAL
PFGIFGALVS VWIAGMTSDV YFQIGLVTLL GLASKNAILI VEYALMKKQE GWTTGAAALE
AARLRFRPII MTSLAFILGV VPLALSSGAG AGARHSVGTG VMGGMIAATF LAIFFVPLFF
YWLTERKISE NRKQQAITDE IAQHHEHELN SK
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