| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1334 |
|---|
| Symbol | betA1 |
|---|
| ID | 3522100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1370783 |
|---|
| End bp | 1372465 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637283798 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_268077 |
|---|
| Protein GI | 71281628 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCG AAAAATTTGA TTACATTATT GTTGGTGCAG GCTCTGCAGG CTGTGTACTG
GCTAACCGTT TAAGTGAAGA CAGTAATAAT CGCGTATTGT TACTTGAAAC CGGTGGTAGT
GATAAAAGTA TTTTTATTCA GATGCCAACC GCACTGTCAA TTCCGATGAA TACCAAAAAA
TACGCTTGGC AGTTTGAAAC CCAACCTGAG CCATTTCTTG ATGAACGTCG TATGCATTGC
CCACGAGGCA AAGTATTAGG TGGCTCATCA TCAATTAACG GCATGGTTTA TGTTCGCGGA
CATGCTAGAG ATTTTGATGA ATGGCAGCAA AGTGGTGCCC AAAACTGGGA TTATGCTCAT
TGTTTACCAT ATTTTAAAAA AGCTGAAACT TGGGCATTTG ATGGTAACGA ATACCGTGGT
AAAAGCGGAC CATTAGGGGT TAATAACGGT AATGAAATGA AAAACCCGCT GTATCAAGCG
TTTGTTGATG CAGGTGTTGA AGCTGGTTAT TTTGCAACGG ATGATTATAA CGCTGCAGCA
CAGGAAGGGT TTGGCCCAAT GCACATGACA GTTAAGAACG GTGTGCGCTG TTCTACTGCA
AATGCTTACC TTCGCCCAGC AATGGCGCGT AGTAATTTAA CGGTAATCAC TCATGCGTTA
GTCCATAAAG TATTATTAGA CGGTAAAAAA ACTGTTGGCG TACGTTATGA ACGCAAAGGG
CAAGTTTTCG ATGTGAGTGT TGAGAAAGAG GTGATTTTAT CGGCGGGGCC TGTTGGTTCA
CCACACCTTT TACAACTCTC TGGTATCGGT GCTAAAAAAG ACTTGGAAGA TGCTGGTATT
GAAGTGCAAC ATGATTTGCC CGGCGTAGGT CAAAACTTAC AAGATCATTT AGAATTTTAC
TTCCAGTTCA AATGTAAAAA ACCAATATCA CTCAATGGCC AACTTGGCTT GTGGAACAAA
TTTTTAATTG GCAGCCGTTG GTTTTTCACC AAAAAAGGAC TGGGCGCTAC TAATCATTTT
GAATCTTGTG GTTTTATTCG TTCTAAAGCT AATGTTGAAT GGCCAGATTT ACAATACCAT
TTTCTACCTG CAGCAATGCG TTACGATGGT AAAGAAGCCT TTGCAGGACA TGGGTTTCAA
GTTCATATAG GTCATAACAA ACCGAAAAGT CGCGGTTCTA TTAAAGCGAT ATCAAACGAT
CCTAAAGCAC ATCCACAAAT ACGTTTTAAT TATCTTGAAC ACGAAGAAGA CCGTGAAGGT
TTCCGTGCTT GTGTGCGTTT AACTCGAGAA ATTATCAACC AAAGTGCGCT TGATGAGTAT
CGTGGTGAAG AAATTCAGCC AGGTATCAAT GTGCAAAGTG ATGAAGAAAT TGATGCCTTT
GTTCGTCAAT TTGTTGAAAG TGCTTACCAT CCTTCGTGCT CATGCAAAAT GGGTACAGAT
GAATTAGCCG TTGTAGACTC AGAAACTCGC GTACATGGTA TTGAGGGATT ACGCGTTGTT
GACTCGTCTA TTTTCCCAAC CATTCCAAAT GGTAATCTTA ATGCACCAAC GATAATGGTT
GCAGAACGTG CCGCTGATCT TATTCGAGGC CGTGAAATAC TAGCGCCTTC TCAGGCTGCC
GTAAAGATTG CGCCTAACTG GCAGCAACAA CAGCGTGCTA ACGAGCCAAA AAGAAAAATA
TAA
|
|---|
| Protein sequence | MKSEKFDYII VGAGSAGCVL ANRLSEDSNN RVLLLETGGS DKSIFIQMPT ALSIPMNTKK
YAWQFETQPE PFLDERRMHC PRGKVLGGSS SINGMVYVRG HARDFDEWQQ SGAQNWDYAH
CLPYFKKAET WAFDGNEYRG KSGPLGVNNG NEMKNPLYQA FVDAGVEAGY FATDDYNAAA
QEGFGPMHMT VKNGVRCSTA NAYLRPAMAR SNLTVITHAL VHKVLLDGKK TVGVRYERKG
QVFDVSVEKE VILSAGPVGS PHLLQLSGIG AKKDLEDAGI EVQHDLPGVG QNLQDHLEFY
FQFKCKKPIS LNGQLGLWNK FLIGSRWFFT KKGLGATNHF ESCGFIRSKA NVEWPDLQYH
FLPAAMRYDG KEAFAGHGFQ VHIGHNKPKS RGSIKAISND PKAHPQIRFN YLEHEEDREG
FRACVRLTRE IINQSALDEY RGEEIQPGIN VQSDEEIDAF VRQFVESAYH PSCSCKMGTD
ELAVVDSETR VHGIEGLRVV DSSIFPTIPN GNLNAPTIMV AERAADLIRG REILAPSQAA
VKIAPNWQQQ QRANEPKRKI
|
|---|
| |