Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1326 |
Symbol | pcaC |
ID | 3518925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1365619 |
End bp | 1366008 |
Gene Length | 390 bp |
Protein Length | 129 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637283790 |
Product | 4-carboxymuconolactone decarboxylase |
Protein accession | YP_268069 |
Protein GI | 71278474 |
COG category | [S] Function unknown |
COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
TIGRFAM ID | [TIGR02425] 4-carboxymuconolactone decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.171416 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAGTG AAAAACAAAA CGAGAATTAT AAAAATGGTG AGCAAGTTCG TCGTGAAGTA ATGGGAGATG AATTTGTTGA TCGTGCTTTA AATAATGCCA CTGAATTTGA CCAACCTTTA CAAGATTTAG TCATGGAAAA TGCGTGGGGA AGTACTTGGA ATAGAAATGA CTTACCAAAA GATACCCGAA GTTTAGTGAC TATCTCTATG TTAATCGCCC TAAAAGCACC GAATGAATTA AAAGGTCATG TTCGTGGTGC ATTACGTAAT GGGGTAACTA AAGAAGAGAT TAGAGCGGTG ATTATGCATG CGAGTGTTTA TTGTGGATTT CCTGCCGCTA TTGAAGCAAT GAGAGCGGCT AAAGAAATTA TTGATACTTG GGAAGGGTGA
|
Protein sequence | MSSEKQNENY KNGEQVRREV MGDEFVDRAL NNATEFDQPL QDLVMENAWG STWNRNDLPK DTRSLVTISM LIALKAPNEL KGHVRGALRN GVTKEEIRAV IMHASVYCGF PAAIEAMRAA KEIIDTWEG
|
| |