Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1291 |
Symbol | |
ID | 3518943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 1334049 |
End bp | 1334903 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637283755 |
Product | sensory box protein |
Protein accession | YP_268034 |
Protein GI | 71278453 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGTAG ATATACTTAA GCAACGAGCG AAAGCTTTCG ATTACGTGTT TGATGCGATA GTAGTAACTG ATCTACAAGG CTTCATTATT GATTGGAATA AAGGCTCAGA AACACTTTAT GGCTATTCCA AAGAACAGGC TATTGGGCAA CCTGTTAATA TGCTGCATGT TCCCGGTGAT ACTGAACATA TCACTTCAGA AGTTATATCA GCGGTAGAAA ATCAGGGGAA ATGGACTGGT GAAATTAGGA TGTTACACAA AGATGGACAC ATTGGCTGGA TTGAATCCAT GTGTGTACCT ATATATGGTG AAAATTATCA GATGGTGGGT GCCTTAGGTA TAAATAGAGA TATCACAAAA CGGAAAAAAG AAACCGAACG ACTTGAACAC CTCGCACATT ATGACCAACT AACAAAAGTC CCAAATCGTT ATCTTTTGCT CGACCGGCTG ACACATTTAA TTACACAGTC TAAACGTAAT AATTATAAAT TTGCTTTGGT TTTTATTGAT GTAGATAAAT TCAAACTCAT TAACGATACA AAAGGTCATC TTTTTGGTGA TCAGGTTTTA ATGGAAATAG CTTTACGTCT TAAAAAATCT ATTCGAAATT CAGATACAGT CGCCAGATTT GGAGGAGATG AATTTGTTAT TTTATTTGAA AGTATTTCTA ATAAAAATGA TGTTTCTATA ATGATTGAAA CTCTAACCCA AGAATTAAAA ACAGAATTGA TTGTTAATGG TATAAACATT GAAATCAATT GTAGTATTGG TATCGCAATA TTCCCTGATG ATGGCACCAC GATAGATACA TTAATAGCTA CAGCCGATAA AGCCATGTAC AAGACTAAAG AGTAG
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Protein sequence | MNVDILKQRA KAFDYVFDAI VVTDLQGFII DWNKGSETLY GYSKEQAIGQ PVNMLHVPGD TEHITSEVIS AVENQGKWTG EIRMLHKDGH IGWIESMCVP IYGENYQMVG ALGINRDITK RKKETERLEH LAHYDQLTKV PNRYLLLDRL THLITQSKRN NYKFALVFID VDKFKLINDT KGHLFGDQVL MEIALRLKKS IRNSDTVARF GGDEFVILFE SISNKNDVSI MIETLTQELK TELIVNGINI EINCSIGIAI FPDDGTTIDT LIATADKAMY KTKE
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