Gene CPS_1291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1291 
Symbol 
ID3518943 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1334049 
End bp1334903 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content35% 
IMG OID637283755 
Productsensory box protein 
Protein accessionYP_268034 
Protein GI71278453 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGTAG ATATACTTAA GCAACGAGCG AAAGCTTTCG ATTACGTGTT TGATGCGATA 
GTAGTAACTG ATCTACAAGG CTTCATTATT GATTGGAATA AAGGCTCAGA AACACTTTAT
GGCTATTCCA AAGAACAGGC TATTGGGCAA CCTGTTAATA TGCTGCATGT TCCCGGTGAT
ACTGAACATA TCACTTCAGA AGTTATATCA GCGGTAGAAA ATCAGGGGAA ATGGACTGGT
GAAATTAGGA TGTTACACAA AGATGGACAC ATTGGCTGGA TTGAATCCAT GTGTGTACCT
ATATATGGTG AAAATTATCA GATGGTGGGT GCCTTAGGTA TAAATAGAGA TATCACAAAA
CGGAAAAAAG AAACCGAACG ACTTGAACAC CTCGCACATT ATGACCAACT AACAAAAGTC
CCAAATCGTT ATCTTTTGCT CGACCGGCTG ACACATTTAA TTACACAGTC TAAACGTAAT
AATTATAAAT TTGCTTTGGT TTTTATTGAT GTAGATAAAT TCAAACTCAT TAACGATACA
AAAGGTCATC TTTTTGGTGA TCAGGTTTTA ATGGAAATAG CTTTACGTCT TAAAAAATCT
ATTCGAAATT CAGATACAGT CGCCAGATTT GGAGGAGATG AATTTGTTAT TTTATTTGAA
AGTATTTCTA ATAAAAATGA TGTTTCTATA ATGATTGAAA CTCTAACCCA AGAATTAAAA
ACAGAATTGA TTGTTAATGG TATAAACATT GAAATCAATT GTAGTATTGG TATCGCAATA
TTCCCTGATG ATGGCACCAC GATAGATACA TTAATAGCTA CAGCCGATAA AGCCATGTAC
AAGACTAAAG AGTAG
 
Protein sequence
MNVDILKQRA KAFDYVFDAI VVTDLQGFII DWNKGSETLY GYSKEQAIGQ PVNMLHVPGD 
TEHITSEVIS AVENQGKWTG EIRMLHKDGH IGWIESMCVP IYGENYQMVG ALGINRDITK
RKKETERLEH LAHYDQLTKV PNRYLLLDRL THLITQSKRN NYKFALVFID VDKFKLINDT
KGHLFGDQVL MEIALRLKKS IRNSDTVARF GGDEFVILFE SISNKNDVSI MIETLTQELK
TELIVNGINI EINCSIGIAI FPDDGTTIDT LIATADKAMY KTKE