Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1288 |
Symbol | |
ID | 3521685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 1330142 |
End bp | 1332199 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637283752 |
Product | sensory box protein |
Protein accession | YP_268031 |
Protein GI | 71281214 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.538668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTCC CCTCAATCCA ACTTTTAAAT TTAATACCAG ACACTGTACT TATTGTTAAT AAAAAAGCTG AGATTATATG GATAAATAAC AATATTACTA ATTTGTTAGG TTATTTACCT GATGAACTAC TCGGTAAATC AATTGAATGT TTGGTACCAA GTCGCACCAG AGAGAAGCAC GTAAACCTTA GAAATTCTTT TATAAACAAA CCGAATAAAC GTTCAATGAA TCAAGGCTCT GGACTTTGGG CTGTTCATAA GAAAAATCAT GAAATACCTG TTTGTATCGA TTTGAATCAT TATGAAGAGT CCGGCGAAAA ATTTACTGTG TGCTCTATTC GATTATTAAG TGAACAGGAA TTAGTCGCAT CAACAATGCA AAAATTACAC GAACGTTTAG AGTTTTCGCA ATCGTTAGCA CATGTTGGTA CCTGGGATTG GGATATTACG AATGAAACTT TGGCTTGGAC CGATGAAACT TATCGAATAT TTGGCGTAAA GCCACAAGAG TTCAAGGCAA CTTATGAAGC CTTTCTTTTT TACATACATG CAGATGATAG GCAGGCTGTT ATTGATGCTG TAAACGACGC GATAAATAAC GATAGCTCAT ACAGTATAAA ACATAGAGTC ATTAGGCCTT CTGGCGAAAT TAGAGAGGTA TTAGAAAAGG GGCAAGTTCT TCGTGATGAA AATGGTAAAG CTAGTCGTAT AATTGGTGCG GTATTGGATA TCACAGAACT TAATCAGAGC AAAGAAAAAT TAGAAAAATT AGCGCATTAC GATGAGAAAA CCCAATTACC CAACCGAGTG TTATGCCGAA AAGAAATTGA AATAAGAATT TCTCATGCTC TTTTAAACAA CAAAAAATTC GCCATTTTAT TTATTGATTT GGATCATTTC AAAAATATCA ATGACACACA AGGACATCTA GCGGGTGATG AGTTTTTACA TGAAATGTCA CAAAAATTAT TAACTATTAT CCCTAAAGGG ATGTTTTTAG CAATCCTTGG CGGGGATGAA TTCATTATCA TTACTGATTA TAGTGATGAT GAGGAGGAGA TTAAAAATAA AGTCACGAGA CTTGCTAAAC AGCTTATATT ATTAATTCCA ACCAAGAAGT CTTATGAGAA TTTCTCAATC GATATTACCG CTAGCATTGG CATAGCTTTA TACCCAAACC ACGGAAATAA TTTTACTAGT TTATTAAGCT CGGCAGACAA TGCCATGTAT CAAGTGAAAA ATACCGGTAG AAATAATTAT GCTATGTATC ACCCCGATAT AGAGCAGAAA AGATTAAGAG AGCTGCAACT AATTAGTGAT ATGCGTACAG GTTTAAAAAA AGGCCAATTT ACAGTGCACT ATCAAGCTAA GCAAAGTTTG AAAACAGATG AGTTGATAGG ATGTGAAGCA TTAATACGTT GGCAGCATCA TACGCTAGGC AATATTCCTC CATTAGAGTT TATATCACTC GCTGAAAGCT CTGGACTTAT TATTCCTATT GGTAAGTTTG TTTTAGAGCA ATCGTGTTTG TTCATAAAGC AGTGGCAAGC ACATTCCGAC AAGTCATTAG TTGTCTCGGT AAATGTTTCT GCCCTGCAAC TTAAAGACCC TCTGTTTAAA GAAGAGGTAT TACAAGTAAT TAACAGCGCA GGTATTAGTG GCCATAATAT CGAATTAGAA TTAACAGAAA GCCTATTGAT GGAAAATATA GAAGCTACAA TACAAACATT ACATGACTTA AAAGAAATAG GCGTATCTAT CTCAATTGAT GATTTTGGTA CTGGTTACTC CTCGTTAAGT TATTTGCAAA AATTACCTGT TGATACCTTA AAGATAGATA AGAGCTTTAT TGATTCACTC TCATCTTCAG ATGAAGATAC TTGGATAGTT ATAAATACGA TCTCCTTAGC ATCAGGCTTG AAACTTAAAA CAGTAGCCGA AGGGGTTGAA ACGCAAGAGC AAAAGTCTAT TTTAGCTGAT TTAGGTTGCG ACATATTACA GGGCTACTTG TATAGTAAAC CAATCCCTAA AAATGAATTT TTTATGAAAT TCAAATAA
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Protein sequence | MQFPSIQLLN LIPDTVLIVN KKAEIIWINN NITNLLGYLP DELLGKSIEC LVPSRTREKH VNLRNSFINK PNKRSMNQGS GLWAVHKKNH EIPVCIDLNH YEESGEKFTV CSIRLLSEQE LVASTMQKLH ERLEFSQSLA HVGTWDWDIT NETLAWTDET YRIFGVKPQE FKATYEAFLF YIHADDRQAV IDAVNDAINN DSSYSIKHRV IRPSGEIREV LEKGQVLRDE NGKASRIIGA VLDITELNQS KEKLEKLAHY DEKTQLPNRV LCRKEIEIRI SHALLNNKKF AILFIDLDHF KNINDTQGHL AGDEFLHEMS QKLLTIIPKG MFLAILGGDE FIIITDYSDD EEEIKNKVTR LAKQLILLIP TKKSYENFSI DITASIGIAL YPNHGNNFTS LLSSADNAMY QVKNTGRNNY AMYHPDIEQK RLRELQLISD MRTGLKKGQF TVHYQAKQSL KTDELIGCEA LIRWQHHTLG NIPPLEFISL AESSGLIIPI GKFVLEQSCL FIKQWQAHSD KSLVVSVNVS ALQLKDPLFK EEVLQVINSA GISGHNIELE LTESLLMENI EATIQTLHDL KEIGVSISID DFGTGYSSLS YLQKLPVDTL KIDKSFIDSL SSSDEDTWIV INTISLASGL KLKTVAEGVE TQEQKSILAD LGCDILQGYL YSKPIPKNEF FMKFK
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