Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1240 |
Symbol | lysA |
ID | 3520097 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 1273535 |
End bp | 1274797 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637283704 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_267983 |
Protein GI | 71279638 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCCAG TTAGCTATTT CCCGCACAAA AATAATGAAA TGTTTGTTGA AAATATTGCT CTTAGCGATA TTGCCCAGCA TGTACAAACT CCCTTTTATT GCTACTCAAG CACAGCCATT GAAACAAGTT TTCAAGCATA TAAAAATGCT TTTAGCAGTC AAGATGCTCT GATTTGTTAT GCAGTAAAAG CCAATAGTAA CCAAGCGGTA CTTGCCACCT TAGCTAAATT AGGCTCAGGT GCAGACGTGG TATCAATGGG TGAAATTCGC CGCGCAATTA CGGCAGGCAT TCCAGCGGAT AAAATTGTCT ACTCTGGTGT TGCGAAAACT GAAGAAGAAA TTCACTACGC GTTATCGTTA GGTATTTTCC AGTTTAATGT TGAGTCTGAG CCAGAGCTAG AGTTGATATC AAAAGTAGCC ACCTCCCTTA ACAAAACAGC TGCGATTGCT TTTCGTATTA ATCCTGATGT TTGTGCGCAA ACCCATGCAA AAATTTCCAC AGGGAAAGCA GAAAACAAGT TTGGCGTCCC CATTTCTAAA GCCCGAATTG CCTATAAACG AGCCGCATCA TTACCTGGTA TAAAAGTGCA AGGTGTTGAT GTACATATTG GTTCTCAATT AACTAGTCTG GCTCCTTTTG AAGAAGCGTA CCAGCGAATT GCTGAACTAG TTAATGAATT AAGAGCAGAT GGTCATGAAA TTAGTGTTGT TGATGTTGGC GGTGGTTTAG GTATTACTTA TCTTGATGAA ATCATCCCGA GCAAGCAAAG CTACGCTGAT TTAGTTAAGG CACAACTTGG TCACCTTAAT TGCAAAATTA TTATTGAGCC GGGTCGTTCA TTATTAGGTA ATGCGGGCAT TCTTGTCTCA AGTGTGGTTT TTATAAAAAA TGGCGAAGAA CGACAATTTT TGATACTTGA TGCGGGTATG AATGACTTGA TCAGACCGAG TATGTATGAA GCATATCATC AAATTATTGC CGTGAATAAA GGTGCTAACG AATTAAAAAC CTACGACGTG GTAGGCCCTG TTTGTGAAAC AGGCGATACT TTTGCTAAAG CAAGACAAGT ACATAAATCA GATGCAGGTG ATTTGATTGC GATTATGAGC AGTGGTGCAT ACGGTTCAGT TATGTCATCT AGCTATAATA CGAGAATGTT GGCGCCTGAA GTGATGGTGA AGGGTAATGA ATTTGCTATA GTAAAAAAAC GCCCTAGTTA CGAAGAGATT ATCAAACAAG ATATTATACC AAGCTGGCTG TAA
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Protein sequence | MTPVSYFPHK NNEMFVENIA LSDIAQHVQT PFYCYSSTAI ETSFQAYKNA FSSQDALICY AVKANSNQAV LATLAKLGSG ADVVSMGEIR RAITAGIPAD KIVYSGVAKT EEEIHYALSL GIFQFNVESE PELELISKVA TSLNKTAAIA FRINPDVCAQ THAKISTGKA ENKFGVPISK ARIAYKRAAS LPGIKVQGVD VHIGSQLTSL APFEEAYQRI AELVNELRAD GHEISVVDVG GGLGITYLDE IIPSKQSYAD LVKAQLGHLN CKIIIEPGRS LLGNAGILVS SVVFIKNGEE RQFLILDAGM NDLIRPSMYE AYHQIIAVNK GANELKTYDV VGPVCETGDT FAKARQVHKS DAGDLIAIMS SGAYGSVMSS SYNTRMLAPE VMVKGNEFAI VKKRPSYEEI IKQDIIPSWL
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