Gene CPS_1235 details

Gene Information

• Locus tag: CPS_1235
• ID: 3522731
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 1268113
• End bp: 1271553
• Gene Length: 3441 bp
• Protein Length: 1146 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637283699
• Product: AcrB/AcrD/AcrF family protein
• Protein accession: YP_267978
• Protein GI: 71282258
• COG category: [V] Defense mechanisms
• COG ID: [COG0841] Cation/multidrug efflux pump

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATTA AAAAGACTTT TACCACGACG TTACTGAGTA AGGTACTTAA GAGTAATGTC 
CCGCTATTTA TTTTGATTTT ATCAATACTG GCTGGCTTGA TAGCGCTTAA CTTAACTCCA 
CGTGAAGAAG AGCCACAAAT TGTTGTGCCC ATGATCGATG TTATCGTCGA TGCCCCAGGG 
GTTAACGCCA AACAAGTAGA GCGATTAGTT ACCACTCCAC TTGAAAAACT ATTAGCACAA 
GTAAAAGGCG TAGAGCACGT TTATTCCGTC AGTAATAGCA ATCAATCTGT GGTTACACTG 
CGATTTACTG TCGGTGAAAA TCGCGAGCGA GCACTGTTAA ATACTTATAA CAAATTACAC 
GCTAATACTG AGAAAATTCC TGCCATTGTT AGTAACTGGC GGGTTAAACC TGTTGAAGTA 
GATGATGTCG CTATTGTCAT GTTAGCGTTA TACAGCACCG ATAGTAGCCA AGTGGATGAT 
TTCGCCTTAA GACGACTTGC ACAAGAAATA TCTACGTTTT TACAAGCGAT TGAAAGTACC 
AGTGAGGTTA CTATTGTTGG AGGTCGCGCC CGCCAAATAC AAGTAAATAT TAATCCCGAA 
CAAATGACAG CACGACAAGT TACTGTCGAT GATATTTTTA ATGCTATTAA GGTGTCAAAT 
GTACTTGAAA GCCACGGCAA TATTACTCTA TCGAATCAAT CAATAACGCT CGAAAGTGGT 
GACACCTATC GCGATATTAA CGCGCTAAAG CAAACCCCTA TTAGTGTTAT TGATGGCAGC 
GTTATTTTAC TAAAAGATAT CGCTGATGTG ATAGATGGAC CCGCAGAACA AACTAGTTAT 
ACTTGGCTAG ACTATGCTAA CAACCATGTA AATGGTGCAA CTTCAGACTA CCCTATGGTA 
ACCATTAGCA TTGCCAAACA ACGCGGTAGT AATGCAGTAA CTGTTGCCAA CGCGGTGCAT 
GAGAAAATAG CACAATTACA ATCAGCAATT TTCCCTGCCA ATGTCGAAGT ACAAGTATTA 
CGTGACTATG GTGCTACAGC TAACGAAAAA GTAAATGATT TAACCACCAG CTTAGCGTTT 
GCTGTTTTTA CCGTGGTAGT ATTTATTGGC GTATTTTTAG GTTGGCGATC TGCGTTAGTG 
GTCGGCTTGG CGGTACCTAT TTGTTACGGT ATCACCTTAT CGCTAGATTT AATTTTTGGT 
TACACCATTA ATCGCGTTAC TCTGTTTGCA CTGATTCTAT CATTAGGTTT ATTAGTCGAT 
GACCCGATTA CTGGCGTCGA TAATATTGAA CGGTATTTAG CAAAAATTAA AGGGAAAGCT 
AATACTAAAA ATATCCAAGA CGCTATTGTC TCAGCCATCA ACGAAATACG CGTGCCTTTG 
TTAATGTCTA CCGTCACTAT TGTACTTGCC TTTATTCCAC TTGCCTTTAT AACCGGCATG 
ATGGGACCTT ATATGGCTCC AATGGCTTTT AATGTGCCGC TAAGTGTCAT CAGTTCAACC 
TTGGTCGCTT TTCTAGTTAC TCCTTGGTTA GCTGGAAAAC TTATTAAAGC TAAACCTGCT 
TCAACCAACT CCCCTCAGGA AGTGAACCAA CAAGGTTTTC AACGCTTATA CCGTAAAATA 
TTATCGCCAT TGTTAGATAG TCGTGCAAAA GGAAAAGCAA TGCTCGGCTT GGTATTAGTG 
TTATTTTTAC TTGCCGCTTT GTTACCTGTT ATGCGTTGGG TGCCCCTTAA ACTATTACCT 
TTTGATAATA AAAATGAAGT ACAAGTCATT ATTGATATGC CCGAAAGTGC CACCCTTGAG 
CAAACGGCTG CCATGGCAAA AAAAGTGTCC GTCATATTAC AAAAAATTCC CGAAGTAACC 
ACCATCGCCA GTTATGTTGG ACTGCCCTCA CCGATAGACT TTAACGGTAT GGTTAGACAG 
TACTACCAAC GTCATGCACC TTATCTCGCT GATTTGCGAG TACTACTGCT TGATAAAAGC 
CAACGTGAAC ACCAATCTCA TGCCATTGTC TTAAGAATGC GAGAGCACTT AGCACCACTA 
AATAATGCTC TAGCACAAGA CAGCGATATA AAAATACGTG TGGTAGAAGT GCCTCCGGGT 
CCACCCGTAT TAAGTACATT GGTGGCGGAA GTATACGGCA ATGAATTTAC CCAATATGCA 
AGTTTACAAC AAGCAGCAAG CTTAGTTGAA CAGCGTCTAA CGTTAGAGCC TTTTGTGGTC 
GAGATAGACT CTACTGTCGG CGGTGAACAA ACACAATTAC GCTTTGTTAG TGATAAAACC 
AAAGCAGCAC TGTCTGGCAT ATCAACGGCA AGTATTAATC AAACCATTGG CGTGGCAACA 
AAAGGACAAG TTGCTGGTTA TTTACACCTT GATAATGAAG CATCTCCCTT AGCTATTAAT 
ATAAAATTAC CGCTTGAACA ACGCCAGTCA TTAAGTGATT TACAACGCTT ATCTTTGAAA 
GGGCAAGCAG GAATAGTACA AACCAGCACT CCGCAAGGCA TTGATATGGC GCCACAACCT 
CTAGTGTCTT TAGGAGAGCT TGGCGAGTTT ATTAAACACA CCCGTGATAA ACCGATATTC 
CATAAAGATT TAAGACCTGT TGTTTATGTC ACTGCTGATA TATCAGGCAG AACACCTGCA 
GAGGTAATTG CAGACATTAA TAGCGATTTA GTTCAGTACC AACCTGATAT CAATAATCAG 
AATATTGAGC CTAGCGATCA AAAGAACTGG CAAGACCGAA GTTTCTTCGC TAATGGTGGC 
GGTACTGTTT GGCAGTTACC CGATGATATT GAGCTTTCAT TTAGTGGTGA AGGTGAATGG 
CGCATAACCA TCAGAGTATT TCGTGATATG GGACTAGCTT TTGCATTCGC ACTAACAGCC 
ATATTTATTG TTCTTCGCAT ACAAACAGGC TCAGCAGCAT TATCAGGCAT TATAATGTCA 
GCCATTCCAT TAACGGTTAT TGGTATTATG CCAGGGTTCT TTTTATTAAA TCAATTTGGC 
GAACGCCAAG TTGCCGGTGC CCCTGATCCT ATTTTATTCA CCGCAACAGC AATGATAGGC 
ATGATTGCCC TAGCAGGCAT AGTAGTTAGA AACTCCTTAA TCTTAATTGA ATTTATAAAC 
CAAGCTCAAC AGCAAGGAGC CCCAATAAAA GAATCATTAA TTCAAGCAGG CACAGTAAGA 
ATGAGACCGG TGTTACTGAC CGCAGGGACA ACACTGCTGG GGAATTTAAT TATCACCTTA 
GACCCTGTAT TTAGTGGACT TGCCATAGCC ATAATATTCG GCATTATCTC TTCAACGGTA 
TTTACCTTGC TCGTAGTTCC TATCGTTTAT TCCTTAGTTT TTGATGGTAA TAAAGCGATA 
GACAACGAAA TAGATCACCA ATTAGACGCT CCATTAGATA ATACATTGAA CGATTCATTA 
GAAAATAAGG CTTCATCATG A 

 

Protein sequence

MTIKKTFTTT LLSKVLKSNV PLFILILSIL AGLIALNLTP REEEPQIVVP MIDVIVDAPG 
VNAKQVERLV TTPLEKLLAQ VKGVEHVYSV SNSNQSVVTL RFTVGENRER ALLNTYNKLH 
ANTEKIPAIV SNWRVKPVEV DDVAIVMLAL YSTDSSQVDD FALRRLAQEI STFLQAIEST 
SEVTIVGGRA RQIQVNINPE QMTARQVTVD DIFNAIKVSN VLESHGNITL SNQSITLESG 
DTYRDINALK QTPISVIDGS VILLKDIADV IDGPAEQTSY TWLDYANNHV NGATSDYPMV 
TISIAKQRGS NAVTVANAVH EKIAQLQSAI FPANVEVQVL RDYGATANEK VNDLTTSLAF 
AVFTVVVFIG VFLGWRSALV VGLAVPICYG ITLSLDLIFG YTINRVTLFA LILSLGLLVD 
DPITGVDNIE RYLAKIKGKA NTKNIQDAIV SAINEIRVPL LMSTVTIVLA FIPLAFITGM 
MGPYMAPMAF NVPLSVISST LVAFLVTPWL AGKLIKAKPA STNSPQEVNQ QGFQRLYRKI 
LSPLLDSRAK GKAMLGLVLV LFLLAALLPV MRWVPLKLLP FDNKNEVQVI IDMPESATLE 
QTAAMAKKVS VILQKIPEVT TIASYVGLPS PIDFNGMVRQ YYQRHAPYLA DLRVLLLDKS 
QREHQSHAIV LRMREHLAPL NNALAQDSDI KIRVVEVPPG PPVLSTLVAE VYGNEFTQYA 
SLQQAASLVE QRLTLEPFVV EIDSTVGGEQ TQLRFVSDKT KAALSGISTA SINQTIGVAT 
KGQVAGYLHL DNEASPLAIN IKLPLEQRQS LSDLQRLSLK GQAGIVQTST PQGIDMAPQP 
LVSLGELGEF IKHTRDKPIF HKDLRPVVYV TADISGRTPA EVIADINSDL VQYQPDINNQ 
NIEPSDQKNW QDRSFFANGG GTVWQLPDDI ELSFSGEGEW RITIRVFRDM GLAFAFALTA 
IFIVLRIQTG SAALSGIIMS AIPLTVIGIM PGFFLLNQFG ERQVAGAPDP ILFTATAMIG 
MIALAGIVVR NSLILIEFIN QAQQQGAPIK ESLIQAGTVR MRPVLLTAGT TLLGNLIITL 
DPVFSGLAIA IIFGIISSTV FTLLVVPIVY SLVFDGNKAI DNEIDHQLDA PLDNTLNDSL 
ENKASS