| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1216 |
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| Symbol | |
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| ID | 3519922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1248219 |
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| End bp | 1251986 |
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| Gene Length | 3768 bp |
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| Protein Length | 1255 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637283680 |
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| Product | hypothetical protein |
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| Protein accession | YP_267959 |
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| Protein GI | 71279463 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGT TTATAGCAAA AGGCATACTG GCTTTAATAC TTGCTACACT ATCGAATGTA
ACCTTAAGTG AAGATATAGA TCTTTATATA AGTGAGGCGG TTCGACAAGC AAATAAAAAA
ACTAAAGTAC TCATTATTTT TGATACTTCA GGTAGCATGA AAGAAATAAG CCGATTTGGC
GAACCATATA TCAATGACCC TGATAACCCT TACATTGCAA CAGATTCAGC TCATGCATAC
GACGATAATA TGCTCTATTT TAATAGGGCG GGTGCTGATA ATACAACAAC TATTCCTAAC
TCCCCTAGTG ACGTACGCCG TTTTACAGGG GCACTTAATG GTTGTTTTAC ATCCATAGCT
AGTTTAGCCG AAAATGGGAC ATATACAGAT TATATGCGAG AATATCGCTC TCAAGACAAC
GAGTGGCAGG AGGTTCGTAA TAATAGTGGC GCAGATCCAG TAGTCATTGA TTGTCGAAAT
GATGCTTATT ATCTTCAATA TGATGAAAAC GGTGAAATTG TGGTGGGTAA CGAAGGAAGT
CGCAACAATG CTTCTGGCTT CTTATCTGGT TATCCTATCG ATGGGGAAGG TACAAGCCAA
AATCCGATTT ATTATGATAA TAGAGTCCCA GCTCAACACA CTAATGTTGA CTGGTATACT
TCTGATGGCT TAATTACTTT ATATACAGCT AACTATTTAC GTTGGTATCA TGGTCAAAGT
ACCGCTTCCC ATTTAGAAGA GCGTTTGCAG ACTGCAAAAA ACAGTATAAG GGATGTTATT
AATAGCACCC CATTGGTGGA ATTTGGCTTA GAGGTTTTCA ACTTTAATTA TGGTGATGAC
GATACTAGCG GTAATGGTGG TCGTATTGCT GCTGGCATTA AAGAAATGAC TGATGATAAT
AGGGCTAACC TGCTTAATAT TATTGCGAAT CAGATAAGTG CCGAAGGCTC AACACCACTT
TGTGAGTCCG TTTATGAAGC ATCTCAATAT TTTGCTGGCG CGTTAGTTGA TTATGGTGAT
GATGATATCG ATGTTCGAGA CTATAATTAT AGTAAAAATA TTCCGCCAAT GGCGACAGAT
ATTACTGAAG TAGTCGATGG ACATAATGTC TATAAAACTC CTTTTGAAGA CTGTGCTTCA
AGTGTTGCCA ATATTATTCT TATCACTGAT GGTGCGCCGC AACATGACTT TGCAGCAGAC
AGTAAAATTA CCGCGATGGT AACCACAGTG CAACGAGCTA ATGATACGGA TGGAAACCCG
GTTTATGAGA GTTTAACTTT TACTGGCGCT CATACTGAGG CGCTTACTGA TGAAACTAAT
ACTTTTGATG GTAGCGCCTA CCCTTCAGGT AATCGCACGA GTGATGATAG TTATTTACCA
GCCTTAGCTA GCTGGATGAG CGAATACGAT ATTAATCTCA ATCGCGCTGG AAAACAGACA
GTGGTGACAC ATACCATTGG TTTTAGTAAT GGCGCAATTG CAGCAAGGGG TCTACTAGAA
GAAACGGCAA GGCGTGGCAA AGGACAATAT GTTGATGCTG ATACAGGGAC ATCGTTAATC
GCCGCCTTAG AGAATATTCT GGATAATTTA CCCGAAGCAA ATGATAGTTT AACTTCAGCC
TCGGTATCGG CAAACAGTTA TTTAAACAAT CAAACCCTTG ACTCGGTTTA TTATGGAATG
TTTGAACCTA GCATGGGAGC ACGTTGGCAA GGTAATTTAA AAAAATATAA AGTCGTAAAT
GAAAAAATAA CAGGCGTTGG TGCTGATGGT AATGGCGATG GTGTTGATGT TATTTGTGAC
GTTGACGGTA GCAGCTCGTT TTGTGATACA GCAAGAAGTT TTTGGTCTAC AGAAGCTGAT
GGAAATGTTG TAGGACAAGG TGGCGTGCTC ACTTGGTTTA ATAGCCATAT CCCAAGTGAC
CGAAAACTCT ATATGGAAAA TGGCGACGGT GCAAGTGCGT TAATGACCTT TAATCGTACT
AATCTTGAAG CGGCCTTTAC AGCCGCTAGT ACAAGTTTAG CTGCAGCACT TGGGGTGACT
GATGCTGATG CTACAATTCA AAGTACAGCT ATAGATGAAA TGCTTGCTTG GGCAACGGGC
TTAGATGTTG ATGATGAAGA CGAAGATACT GCTACCGATG ACATGAGAAA AAGTGTTTTT
GGTGACCCAT TACACTCAAA GCCTCTAGTA GTCAATTATG GCGGAAGAGT ATATGACGAA
GATACAAATA CCTACTCGGG CGAAGATGAT ATTCGCATTG TTATTGGTAC CAACTCAGGT
GCTCTGCATA TGTTTAAAGA TAATGATACA TCAGTAGCAG AGAGCTGGGC ATTTATGCCT
ACCGAATTTA TCAATAATAT TAAACCGTTA CGTACTAGTC CCGCATCAGC AAATAAAATT
TACGGCATTG ATGGTGAGAT TTCTATTTAC CAAGATGATA AAAATGGCGA TGGAATTATT
GGCGCTGGAG ATACTGCTTG GATTTTCTTT GGCTTACGCC GAGGCGGTAG CTCTTATTAT
GCACTAGATA TTTCTTCGCC TGATGCCCCT AAGTTGTTGT GGCGTATAGA CAGCAGCAAA
CCAAACTTTA CTCAACTTGG CCAATCTTGG TCACAACCTA AAATTGGTTA TTCAGCGCTT
AATTTTACTA CTGGAACTGG TAGCACAGCC AAGCCGGTAC TCTTTATTGG TGGTGGTTAT
GATACTAAAA AAGATAGTAC TGGGGTGGCA ACTCCAGATG ATAAAGGCCA AGGTATTTAC
ATGCTTGACG CGGCAACGGG TGGCCTTTTA TGGAGTGGCT TACCAACAGG AGGTACGACA
GCATTTCCTG GTGAACATAG CATTCCATCA CCCATTGCTT TACTTGACAG TACTGGAGAT
GGCTTAATTG ATCGTTTATA TACTGGAGAT ACTGGTGGGA ATGTCTGGCG AGTAGATATG
CCAGGTAAAG AAACCAGTGA TTTTTCTATC TCTCAGTTAG CAAGTTTGGG AGGAGGGGTG
AATGATCAAC GCTTTTTTTA TGAGCCAACA ATTGCCAGAG CACTCATTTC TGAGATTGTT
AAGACTGAAG TTACAGATGC TGATGGTGTA ACAACAGAGG TTTTTGTTCA TCAAGAGATC
CCATACGACG CTATTTTACT AGGCTCGGGC GATAGGACTA CTCCGTTAGG CAAAGATACG
ACGGATACCC TTTATATGAT TAAGGACAGT AATATCATCA CTAAAACTTT TCCAAGTCGA
CCTGATGAAG ATGCGATGGA TCTTATAGCT AAAACTGATT TATATAACTA TACGACTAAC
CCTTTTGATG CAGCTACCGA TGATACAGCA AAATATGATT TACAGAAATT AGCCAGTGAA
GAATCAGGGT GGTATATCGA TTTGCGTGCT ACAGGTGAAA AAAGTACAGC ATCAGCCCTA
GTTATAAAAG GAGTTGCATA CTTTACTACT TACACACCAG CGTCAAGTTC AGTTCTTATT
AGTTGTATAC CTCCAAAAGG AAGTGGAGAG TTATATGCTG TAGACCTCGC CTTAGGTACC
AGAAGAAACC TAACACAGAC AGAAGTACGT GATAATGATG ATCGTGTAAT TAAGATTAAT
AATGATTGGT TAGGGCCGCC GACGTTAATT ATGTTACCTG AAACTGATAA TGATGACACG
ACTGTAGATC CTATAACGGG TGATATTATT GTTGGTGACA AAGTCATTTC GGTAGACTTT
TCTTTAGCAA CTGTGCGTAC TTACCTTTAT AGTACAGAGG TTCAATAA
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| Protein sequence | MNKFIAKGIL ALILATLSNV TLSEDIDLYI SEAVRQANKK TKVLIIFDTS GSMKEISRFG
EPYINDPDNP YIATDSAHAY DDNMLYFNRA GADNTTTIPN SPSDVRRFTG ALNGCFTSIA
SLAENGTYTD YMREYRSQDN EWQEVRNNSG ADPVVIDCRN DAYYLQYDEN GEIVVGNEGS
RNNASGFLSG YPIDGEGTSQ NPIYYDNRVP AQHTNVDWYT SDGLITLYTA NYLRWYHGQS
TASHLEERLQ TAKNSIRDVI NSTPLVEFGL EVFNFNYGDD DTSGNGGRIA AGIKEMTDDN
RANLLNIIAN QISAEGSTPL CESVYEASQY FAGALVDYGD DDIDVRDYNY SKNIPPMATD
ITEVVDGHNV YKTPFEDCAS SVANIILITD GAPQHDFAAD SKITAMVTTV QRANDTDGNP
VYESLTFTGA HTEALTDETN TFDGSAYPSG NRTSDDSYLP ALASWMSEYD INLNRAGKQT
VVTHTIGFSN GAIAARGLLE ETARRGKGQY VDADTGTSLI AALENILDNL PEANDSLTSA
SVSANSYLNN QTLDSVYYGM FEPSMGARWQ GNLKKYKVVN EKITGVGADG NGDGVDVICD
VDGSSSFCDT ARSFWSTEAD GNVVGQGGVL TWFNSHIPSD RKLYMENGDG ASALMTFNRT
NLEAAFTAAS TSLAAALGVT DADATIQSTA IDEMLAWATG LDVDDEDEDT ATDDMRKSVF
GDPLHSKPLV VNYGGRVYDE DTNTYSGEDD IRIVIGTNSG ALHMFKDNDT SVAESWAFMP
TEFINNIKPL RTSPASANKI YGIDGEISIY QDDKNGDGII GAGDTAWIFF GLRRGGSSYY
ALDISSPDAP KLLWRIDSSK PNFTQLGQSW SQPKIGYSAL NFTTGTGSTA KPVLFIGGGY
DTKKDSTGVA TPDDKGQGIY MLDAATGGLL WSGLPTGGTT AFPGEHSIPS PIALLDSTGD
GLIDRLYTGD TGGNVWRVDM PGKETSDFSI SQLASLGGGV NDQRFFYEPT IARALISEIV
KTEVTDADGV TTEVFVHQEI PYDAILLGSG DRTTPLGKDT TDTLYMIKDS NIITKTFPSR
PDEDAMDLIA KTDLYNYTTN PFDAATDDTA KYDLQKLASE ESGWYIDLRA TGEKSTASAL
VIKGVAYFTT YTPASSSVLI SCIPPKGSGE LYAVDLALGT RRNLTQTEVR DNDDRVIKIN
NDWLGPPTLI MLPETDNDDT TVDPITGDII VGDKVISVDF SLATVRTYLY STEVQ
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