| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1197 |
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| Symbol | topA |
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| ID | 3521498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1227821 |
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| End bp | 1230520 |
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| Gene Length | 2700 bp |
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| Protein Length | 899 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637283661 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_267940 |
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| Protein GI | 71281029 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAT CACTAGTTAT TGTCGAGTCG CCAGCCAAAG CGAAAACAAT TAATAAATAT
CTAGGTAATG ACTTTATTGT AAAGTCGAGT GTTGGTCATG TACGTGATCT TCCGCACAGT
AGCACAGGTA AAAAAGTTGC TGCCAAGTCT CCAGCGGAAG TGCGTAAAAT GGAACCAGCA
GCAAAAGCTA AATACAAAGC CAAGCGTGAT AAACAAGCGC TGGTTAATCG TATGGGCATT
GACCCAGATA AAAACTGGGC AGCCGATTAT CAAATACTGC CAGGAAAAGA AAAAGTTGTT
GCTGAGCTTA AAAAGTTAGC GGATAAAGCA GACATTGTTT ATCTCGCAAC GGATTTGGAT
CGCGAGGGAG AAGCGATTGC TTGGCATTTA AAAGAGATTA TCGGTGGGGA AGATGAAAAG
TTCCGTCGTG TTGTCTTCAA TGAAATAACT GAATCATCAA TTCAACAGGC GTTTGCTACA
CCGGGTGAGT TGAGTATGCC GGGTGTTAAT GCTCAGCAAG CAAGACGTTT TCTCGATCGT
GTGGTTGGCT TTATGGTCAG TCCATTATTG TGGAAAAAAG TAGCCCGTGG TTTATCTGCC
GGACGTGTTC AATCTGTTGC TGTAAAATTA GTCGTTGAAA AAGAACGTGA AATCAAAGCA
TTTGATCCCA AAGAGTTTTG GGAAATTGCC GTAGATACGC ACGCATCGAC AGGTGAAGTA
CTAACCCTTG ATGTGACCCA TGAAAATGGC AAAGCGTTTA AACCGACTAC TGAAAAAGAG
ACCAATGCTG CTTTAGCAAT ATTAAAGCCA GCGGATTATG CTGTTAGTAA ACGTGAAGAT
AGGCCGTCAA AAAGTACACC ATCTGCACCG TTCATTACCT CAACGCTACA GCAAGCCGCC
AGTACTAAAC TGGGATATGG TGTCAAGCGT ACTATGGGCT TAGCCCAGCG TTTGTACGAA
GCCGGTCATA TAACTTATAT GCGTACCGAT TCAACAAACT TAAGTAAAGA TGCGGTAGAA
ATGTGTCGTA AGTACATCAG CGATAGTTTT GGTGATAATT ACTTACCAGA AAATGCAAAA
ACTTACGGTT CTAAAGCGGG GGCACAAGAG GCGCATGAAG CCATACGCCC ATCAAATGTT
AAGCTTGAAG CTGCATTTCT TGAGGGTATT GAAGCCGATG CGAAGAAGCT GTATGAGTTA
ATTTGGCGTC AGTTTGTTGC CTGTCAAATG ACCGCTGCTC GTTATACTGT TAGTACTTTA
ACTATTAGTG CTGCTAGCTT TGACTTAAAA GCTAAAGGCC GAGTGATGCA ATTTGATGGT
TGGACAATTG TTCATCCACA ACTGAGTAAA GGTGATGATA CACACTTACC TGATTTACAA
GTTGGCGAAG CGTTAACGTT AGATAAAATC GAACCAAGCC AGCATTTTAC TAAGCCACCA
GCACGTTTTG GTGAAGCTTC TTTAGTTAAA GAATTAGAAA AACGCTCAAT TGGTCGTCCG
TCAACTTATG CGTCAATTAT TTCTACGATT CAAGATCGTG GTTATGTTCG GTTGGACAAA
AAACGTTTCT ATGCTGAAAA AATGGGTGAA ATTGTTACTA ACAGTTTATC TGGTAGCTTT
GAAAAGTTAA TGAGCTACGA ATTCACGTCG AACATGGAAC AAGAACTTGA TGAAATAGCA
GGTGGTAGTG CTGATTGGAA AGGGGTTTTA GACGAGTTTT ATAAAAACTT TACCAAACAA
TTATCAAAAG CTGACCAACC CTCTGAAGAT GGTGGTATGC AAACCAATGA ACCAGTATTA
ACGGATATTG ATTGCCCTAC CTGTAATCGT AAAATGGGCA TTCGAACCGC TCAAACAGGT
GTGTTTTTAG GCTGTTCTGG ATATGCTTTA CCACCAAAAG AACGCTGTAC AAAGACTATG
AACTTAACCG CTGGTGAAGA AGCGGTGAGT ATTTTAGCTG AAGATGCTGA AACTGAAGCG
CTCATGGCAA TGCGTCGTTG TGATAAATGT GGCACTGCGA TGGATAGTTA CCTTATTGAC
GAAACACGTA AGTTGCATGT TTGCGGTAAT AATCCCGTAT GTGATGGCAT TGAAGTTGAA
AAAGGCGAAT TTAAAATTAA AGGTTATGAT GGACCAATTT TAGATTGTGA CCGTTGTGAA
TCGCCGATGG AGTTGAAATC TGGCCGTTTT GGTAAGTATT TCGATTGTAC CAATGAAGAA
TGTAAAAATA CTCGTAAGTT ACTCGCCAGT GGTGAAGCTG CGCCGCCAAA AGAGGACCCA
GTGCAATTAC CTGAGCTTGA GTGTGAAAAG TCTGAAGCTC ACTTTGTGCT TCGTGATGGC
GCTGCAGGTA TCTTTTTAGC TGCGCACACT TTTCCTCGCT CAAGAGAAAC TCGAGCGCCA
AAAGTAGCAG AATTGCAAAG GTTCAGAGAT CGTATTTCAG AAAAATTCTA TTATTTAGCT
GATGCACCTG CAGAAGATAA TGAAGGAAAT TTATCGGTAG TACGTTACAG CCGTAAAACG
AAAGAGCAGT ACGTGATGAC CGAGATTGCG ACTGAAGAAG GCAAACCTAA AGCAACAGGT
TGGACTGCGA AATATATTGA CGGCAAATGG ATTGAAGACA TTCCCAAGAA AAAGGTGGCT
AAAAAGAAAG CAGCCAAAAA ACCAGCAGCA AAGAAAAAAG CTAAAACAGC AGCTGAGTAA
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| Protein sequence | MAKSLVIVES PAKAKTINKY LGNDFIVKSS VGHVRDLPHS STGKKVAAKS PAEVRKMEPA
AKAKYKAKRD KQALVNRMGI DPDKNWAADY QILPGKEKVV AELKKLADKA DIVYLATDLD
REGEAIAWHL KEIIGGEDEK FRRVVFNEIT ESSIQQAFAT PGELSMPGVN AQQARRFLDR
VVGFMVSPLL WKKVARGLSA GRVQSVAVKL VVEKEREIKA FDPKEFWEIA VDTHASTGEV
LTLDVTHENG KAFKPTTEKE TNAALAILKP ADYAVSKRED RPSKSTPSAP FITSTLQQAA
STKLGYGVKR TMGLAQRLYE AGHITYMRTD STNLSKDAVE MCRKYISDSF GDNYLPENAK
TYGSKAGAQE AHEAIRPSNV KLEAAFLEGI EADAKKLYEL IWRQFVACQM TAARYTVSTL
TISAASFDLK AKGRVMQFDG WTIVHPQLSK GDDTHLPDLQ VGEALTLDKI EPSQHFTKPP
ARFGEASLVK ELEKRSIGRP STYASIISTI QDRGYVRLDK KRFYAEKMGE IVTNSLSGSF
EKLMSYEFTS NMEQELDEIA GGSADWKGVL DEFYKNFTKQ LSKADQPSED GGMQTNEPVL
TDIDCPTCNR KMGIRTAQTG VFLGCSGYAL PPKERCTKTM NLTAGEEAVS ILAEDAETEA
LMAMRRCDKC GTAMDSYLID ETRKLHVCGN NPVCDGIEVE KGEFKIKGYD GPILDCDRCE
SPMELKSGRF GKYFDCTNEE CKNTRKLLAS GEAAPPKEDP VQLPELECEK SEAHFVLRDG
AAGIFLAAHT FPRSRETRAP KVAELQRFRD RISEKFYYLA DAPAEDNEGN LSVVRYSRKT
KEQYVMTEIA TEEGKPKATG WTAKYIDGKW IEDIPKKKVA KKKAAKKPAA KKKAKTAAE
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