| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1172 |
|---|
| Symbol | |
|---|
| ID | 3518743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1195472 |
|---|
| End bp | 1196242 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637283636 |
|---|
| Product | class II aldolase/adducin domain-containing protein |
|---|
| Protein accession | YP_267915 |
|---|
| Protein GI | 71278643 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0834795 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAT TGCCTAAACT CGACTTAAAA AATAAAGTAT CAGCCCAAGA ATGGCAATTA
CGGGTTGATT TAGCGGCTTG TTATCGATTA TTGCAAATGC ATGGTTGGGA TGACCTTATT
CATACCCATA TTTCTGTATG TATTCCTGGT ACAGAACATA TTTTGATTAA TGCTTTTGGT
CTAGCTTTTG AAGAAATAAC CGCTTCAAAT TTAGTTAAAA TTGATATCAA GGGTAATATT
ATCGACAAAG ACTGCCCGTT TGAAATAAAC CCTGCTGGTT TCACTATTCA TAGTGCAGTA
CATGAAGTAC GCCATGATGA TATTTGTGCT TTGCACGTGC ATACCAATGA AACCATTGCC
GTTGCTAGTG TTGAAGAAGG TTTGTTACCG TTAAGCCAGT ATTCTATGTT TGCGTTAGCT
TCGATGAGTT ACCATGATTA TGAAGGCCTA GCGGTGAATG ATGATGAAAA GCTTAGATTA
CAAAATGATT TAGGTGATAA AAACTTTATG TTATTGCGAA ATCATGGTGC CTTAACCATG
GGCAAAACCA TTGGTGATGC TTTTATGCAT ATGTACGATT TAACGCGTGC TTGCCAAATA
CAGTTGCAAG TAATGGCAAC GGGTATGAAA CCTATTTATG CCCCGCAAAG CATTATTGAT
GGTATTAAAG CGCAAGCTAA TATTGTGCAC GATGGGGAAA CTGGCGGTCA AAAAGCATGG
CCAGCGATGT TACGAAGAGT TTATCGTAAT GATCCAACCT TTGCAGAGTA G
|
|---|
| Protein sequence | MQQLPKLDLK NKVSAQEWQL RVDLAACYRL LQMHGWDDLI HTHISVCIPG TEHILINAFG
LAFEEITASN LVKIDIKGNI IDKDCPFEIN PAGFTIHSAV HEVRHDDICA LHVHTNETIA
VASVEEGLLP LSQYSMFALA SMSYHDYEGL AVNDDEKLRL QNDLGDKNFM LLRNHGALTM
GKTIGDAFMH MYDLTRACQI QLQVMATGMK PIYAPQSIID GIKAQANIVH DGETGGQKAW
PAMLRRVYRN DPTFAE
|
|---|
| |