| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1171 |
|---|
| Symbol | |
|---|
| ID | 3523076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1193906 |
|---|
| End bp | 1195132 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637283635 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_267914 |
|---|
| Protein GI | 71282601 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2966] Uncharacterized conserved protein
[COG3610] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.944461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAA CCGATAATTT TTACCAAAAA CGCCGTTTTA TCATCAAATT AGGCAAAGCT
TTACATAAGC TGGGTTCTAC GGCTTATCGC CTAGAAGACA ACTTATTATC TATTGCTAAG
TTTCTCGAAC TTCGAGCTTC TTTTATCATC ACGCCTACCG CATTAACATT CATCTTATCT
GATGATGAAG ATGATCAACA ATATAATCAC TTAGTTCGAG TGAGCCCTGG CGATATTGAT
CTTGGCTCTT TAGCACGTAT TGATGAACTC GTTGATGAGT TAATTGATGG CCAACGCACG
CTCGAAGAAG CGATCGAGCG TTTAGCCGAG GTAAAAAATA AACCAGCGCC TTACGGCACA
CTGTTATCTT TTTTAGCTTT TGGTGCATCA AGTGGCGCTT TCGCCATGTT AATGCATACC
AGCTGGCACG ATGTCTTTTG GTCAACTATT TTAGGTTGGG TTACCTTTGC CTTTGTACTT
TGGTCAGAAC GTTCACGGCG CATGTCAGAT TTACTCGAGC CTATGGCAGC GCTCACGGCA
TCGCTATTAG CCTCCGCAAT TTCTATGATT GACCCTAGTA TTAATATTCC TATGGTTATT
CTATCTAGCA TCATTGTTTT TATTCCAGGT TTGTCTTTAA CGGTCGGTTT ATCTGAACTT
GCCGCTCGAC ATTTAATGTC TGGTACAGCA CGCATCATGG ACAGTATAAT GGTGCTGTTT
AAGCTTTATT TCGGCGCGGT ATTGGGTATG GCTTTAGGTA ACTTAATGTG GGGAACCGCA
ATATTCCTGC CCCCTGAAAC AATGCCTGTT TGGACTTCTT GGTTAGCGGT AACCACGTTA
TCAGTAAGCT TAGTTATTCT TTTTAAAGTC CGATTAAAAG ATGCACCTTG GGGTATGATT
GCTGGTTATA TTGCTTTTGG TGTCAGCATA TGGGCTACCG AATATTTAGG CGTGGCGCTA
GGTGCATTCG TTGGCGCTTT TGCACTTGGC TTATATAGCA ACTTATTCTC TCGACTGATG
AACCTACCTT CTAGCATTGT AAGACTGCTT GGTTTAGTTG TGCTTGTGCC GGGTTCAAAA
GTATATATTG GTTTAAACAG CGCAGTATCA GGTCAAAATA TGCTAAATGT ACCCGATTTA
GGCTCACAAA CATTTTTAAT ATTTATGTCT CTGGTCGCAG GTATAATATT CTCCAACGCA
GTATTGCCCC ACGGTAAAAA CTTATAA
|
|---|
| Protein sequence | MQKTDNFYQK RRFIIKLGKA LHKLGSTAYR LEDNLLSIAK FLELRASFII TPTALTFILS
DDEDDQQYNH LVRVSPGDID LGSLARIDEL VDELIDGQRT LEEAIERLAE VKNKPAPYGT
LLSFLAFGAS SGAFAMLMHT SWHDVFWSTI LGWVTFAFVL WSERSRRMSD LLEPMAALTA
SLLASAISMI DPSINIPMVI LSSIIVFIPG LSLTVGLSEL AARHLMSGTA RIMDSIMVLF
KLYFGAVLGM ALGNLMWGTA IFLPPETMPV WTSWLAVTTL SVSLVILFKV RLKDAPWGMI
AGYIAFGVSI WATEYLGVAL GAFVGAFALG LYSNLFSRLM NLPSSIVRLL GLVVLVPGSK
VYIGLNSAVS GQNMLNVPDL GSQTFLIFMS LVAGIIFSNA VLPHGKNL
|
|---|
| |