Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1162 |
Symbol | btuB |
ID | 3523005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 1183704 |
End bp | 1185572 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637283626 |
Product | tonB-dependent vitamin B12 receptor |
Protein accession | YP_267905 |
Protein GI | 71282530 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAAA CAATAATAGC ACTAAGTATA AGCAGCCTAC TTTACTCATC ACTTTCTTTT GCAGAGCAAA CTAGCCCTAC AACGATTGAT AAAGCAGACG AAACCATTGT CATTACTGCT AACCGCAGTA TTCAAGACAA ATTTGATACC TTAGCTTCGG TGAATATATT CACTAGAGAA AACATAGAAC AAATTCAGCC TTTATCTATT AGTGACTTAC TTGGCCGAGT TGCCGGTATC TCTATTAATA CGCAAGGTAC TTCTGCGCAT AAAACGTCTG CCTTTGTACG TGGTACTAAT TCAGACCACG TATTAGTATT AGTTAATGGA GTTCGGATTG GCTCTGCCAC ACTTGGCTCG AAAAGTCTTG CTTCGATACC GGTACAGTTG GTTGAACGTG TAGAAGTCAT TAAAGGACCT AGAGCTGCCT TGTGGGGATC TGATGCCATT GGTGGTGTAA TCCAAATTTT TACCCGTGAC TTAGCTGCAG GTGAAGGCCA GGTAGGAATA AAAGTAGGCA GTGATAGCTT ATACCAAGGT TATGGTGCAT TAGGCTTTGG TAATAAAGAA CACGGTTACA CATTAAGCGC AACGGCAGAA AAATCTGATG GTTTTGATGT AGTTGTCCCT GATGGTAATA GCCAATATAC CGTAGATCAA AACGATGACG ATGGTTATGA CCGTCAATCA ATAGCACTTT CTGGTACCAG TCAGTTTACT CAAGCCTATG CACTTGAGTT AAATACACAG TACGACCAAG GCACTACTGA ATTTGATGCT AACACCAAAT ACGGTGGTGA CGAAACCACG TATGAAAACT ACCACTTTCT ATTACGAAAC CATCTTCAGC TAGAACAGGT GTATTTGCAA TTAGGTTTAA GTACTTCAGA AGACAGCACT GAAGATAACT ACAGCAAATA TAACAGTCAA AATAGCGCCA GTAATGCAAA TAGCTTATTC ACTACCAATC GTGAGCAAGT TACCGCGTTA GCTCAACTGC CATTAGCTGA CTCATCAGAA ATCACTGCAG GATTTGAGTG GTATACAGAA AGCATTGAAA GTAATAAAGA ATATGATGAA ACCGATAGAG ATGCTAACGC AGTTTTTGTC ACGGGTCGTC ATGATATTGA GCAAGTGAAA TTAGAAGCTT CTGTTCGTTA TGATAAAGTA GGCGACATTG ATAGCGAGAC AACGTATCAA GTAGCTGCGG GTTACCAAGT TAATGATCAA CTACTATTCT CACTAAGTCA CGGAACTGCT TTCAAAGCGC CTAGCTTCAA CGACTTATAC TACCCTTGGC AAGGCAACCC TGATTTAATA TCAGAAACCG CGGATACCTC GGAATTTTTA GCACGTTTTC AAAACGATAC TCTTTCTGCT GAAGTATCTA TTTACCAATC AGATATTGAT AACTTAATTG AGTGGGCTCC TACTGCATCA GGTGCATATA AGCCTTCAAA TGTTGCAAAA GCTAAAATAT TAGGTGCTGA AGCAACTTTT ACTGCTGCTA TTTACAACAC CAATAACACA TTAACATTGA GCCATGTTGA TGCTGAAGAC AAAACGACAG ATCATCAATT AGCTAGACGA CCAAATTTTT CTGCAAATTA TAACTTCGTT TACTCACTCA AGCAGTTTGA TTTCACCTTT GATGTAGACT ATCAAGGTAG TAGATATGAT GGTGCTAACG ATCCAGTAAA AACATTGAAA GCCTTTACTT TGCTTGATGT TGGTTTAAAT TACCGACTAA ACAACCAAGT AAGTTTACTA GCGAAGGTAA CAAATCTAAC TGACAAAGAT TATCAAACAT CAAGTGAATA TCCTGGTTCA GAGCGTGGTT ATACCCTTAC TGTAGATTAT AAGTTTTAA
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Protein sequence | MNKTIIALSI SSLLYSSLSF AEQTSPTTID KADETIVITA NRSIQDKFDT LASVNIFTRE NIEQIQPLSI SDLLGRVAGI SINTQGTSAH KTSAFVRGTN SDHVLVLVNG VRIGSATLGS KSLASIPVQL VERVEVIKGP RAALWGSDAI GGVIQIFTRD LAAGEGQVGI KVGSDSLYQG YGALGFGNKE HGYTLSATAE KSDGFDVVVP DGNSQYTVDQ NDDDGYDRQS IALSGTSQFT QAYALELNTQ YDQGTTEFDA NTKYGGDETT YENYHFLLRN HLQLEQVYLQ LGLSTSEDST EDNYSKYNSQ NSASNANSLF TTNREQVTAL AQLPLADSSE ITAGFEWYTE SIESNKEYDE TDRDANAVFV TGRHDIEQVK LEASVRYDKV GDIDSETTYQ VAAGYQVNDQ LLFSLSHGTA FKAPSFNDLY YPWQGNPDLI SETADTSEFL ARFQNDTLSA EVSIYQSDID NLIEWAPTAS GAYKPSNVAK AKILGAEATF TAAIYNTNNT LTLSHVDAED KTTDHQLARR PNFSANYNFV YSLKQFDFTF DVDYQGSRYD GANDPVKTLK AFTLLDVGLN YRLNNQVSLL AKVTNLTDKD YQTSSEYPGS ERGYTLTVDY KF
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