| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1139 |
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| Symbol | |
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| ID | 3518793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1162017 |
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| End bp | 1164362 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637283603 |
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| Product | GGDEF/GAF/EAL domain-containing protein |
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| Protein accession | YP_267882 |
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| Protein GI | 71278615 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0850133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATTTGA AATCTAAAGT ACCATCACTT ATATCTATCT CTCCTGAAGC ATCCATTGCT
TTAGGCAATT TTACGTTAGC AATTACTGAG GCTGTTTCTG AAAAAGAAAT TTATAATAAA
CTAGCTGAAA ATTTACCTAA GATACTACAA GCTGACAGAG GTAGTGTTAC TTTAATAACA
GAAAATAAAG ATGAGTTTGA AGTCTTTTCC CTACAGGGAC CTGAGGGAAT GTTATCTATT
GGAAAATACT TTTCCGTTGA TAATTCGCTG GCAGGTTTAG CTGTACAGCA AGAAAAAACA
ATTATTTCTA AGCTAAATGC TGACCGCATA GAAATAGATG CTCAACAGCT TTATCAGCAA
GACTTGTTAT CAATTATGAA TTCACCATTA CAGTTTAGTG ATCGTATAAT AGGAACGGTG
AATATAGGTA GTTACAAAGA GAATGCTTAT GATAGTACTT CGTTAGAGCT GTTAACGTTA
GTTAGTACGT TAGTCTCTAA TTATTTAGAA CGGCAACATC TACTTGAACA AGCTCAAATT
GGCGTTAAGC AGTATAAAAC CTATTCAAAA CAGTTAGAGT CTCTTAACCA CGTAGCTGAA
GAGCTTTGTG CTGCTACGAA TGAAAGTGAG GTTTTTTCTA TTATCACTCG TTCGGCAAGT
CACATTATTT CAGCACAAAG AATCAGTTAT TGTGTGCCTA ATTATAAAGA TAAATGTTTT
GAAATACGGT CAGTATTTTC TGAAAATGAG GTTATGAAGT CGGCTACTGT TGACATGGAA
AACAGTGCAT TACAATTTGT CTTACAATCA GGGAGCCCTC AATTTTTTGA AAATTTGGCT
GTAACCAATT TTACTGATCA TTTAATATTA AGTAAAAACG GTTTGTGTTC AGGCTGGAGT
GTGCCTGTTC GAGTGAAGGG CGAAATTGTT GGTTTGCTAA ATGCCGCTAG TAACGTGAAA
ATTAATGAAA GAGCTCAACA GCTCGGTGTT ATAAAAATGC TTAGTGGAAT TATGGGAGTG
ACATTAAGTC GAGTTAATTT ACAAGAACAG TTAGAGCATC AAGCGTGTTA CGACACACTG
ACAGGTTTGC CAAACCGGCA TCAGTTTAAT CAAAGAATGG AATTGGCAAT TACCCAAGAT
AACCCTATAC CTTTTACCTT GTTATTTATT GATTTAGACC GTTTCAAAGT GGTTAACGAT
ACCATGGGGC ACGATGTTGG AGATGAGTTA TTATGTCGGG TTACTCAACG CATTAATCAA
CAAATAAGAA AAGAAGATTT TGCAGCTCGA CATGGTGGTG ATGAATTTGT CGTTCTATTG
CTTAACAAGC AATCGAAAGC TATTGCTGAT ATCACTTCAG CCAGAATAAT TAAAGCGCTT
AAAGAGCCTT TTCAAATTGA TGAACATAGT ATTTTTATTG GTGCCAGCAT TGGTATTAGT
TATTTCCCAG AACATAGTAA AAATTCAGAA GAGTTACTTA AATATGCTGA TATTGCGATG
TATCATGCGA AAAAACAGGG AAAAAGCAGC TTTAAATTAT ATTCTAGCCG TCTTTCCGAT
AAAATTCATT GTCGGCAAAA GCTGGAAACT TTGTTGAGAT TAGCCGTTAA AAATGAGGAA
TTACATTTAG TTTTTCAACC ACAAATTAAT GAAGATGGTG TCTTTGCTAT TGAGGCTTTA
TTAAGGTGGG AAGACCCTGA ATTGGGAGTT ATTTCGGCTG ATGAGTTTAT CCCCATTGCA
GAAGAAAGTT TATTAATAGA AGAAATCACT CACTGGGTTA TTAATCAAAG TTTGCAAATG
ATTGCACGGT TAAGATTAAT ATGTCCGTCA GTTTATGTTG CGGTTAACAT TTCGGCTAAG
AATTGTTTGT ATCCTGAAAA GTTGAAACAT TGCATATTAA CGGGGTTAAA TGACGCTAAT
TTACCAGGCT CTGCACTTGA ATTAGAAGTT ACAGAAAATG TTTTTCTACA AAACGTACAT
AATACCAATA AGTTATTTAA GGACCTAGGT CACTATGGTA TTAGATTTGC TATTGATGAT
TTTGGCACAG GTTATTCTTC ATTAACTTAT TTACTTAATT TACCGCTAAA TACATTAAAG
ATTGATCGCT CATTCATTCA AGATATTCAT TGCAATAAAA TTAAGCTTGG TGTGGTTAAA
GGTATTTTGG TTATAGCCAA GAGTTTATCA ATGAATTGTC TTGCTGAAGG GGTAGAAATT
GAGGCACAAA AACAGTGTCT TGAGGAGTTG GGGTGTAATC GTTTTCAAGG TTATTATTTT
AGTAAGCCAT TAAGGGAAAA AGATTTTTTA TTATATTTAA AAAGTGATCT CTTACAGAAA
AGCTAA
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| Protein sequence | MNLKSKVPSL ISISPEASIA LGNFTLAITE AVSEKEIYNK LAENLPKILQ ADRGSVTLIT
ENKDEFEVFS LQGPEGMLSI GKYFSVDNSL AGLAVQQEKT IISKLNADRI EIDAQQLYQQ
DLLSIMNSPL QFSDRIIGTV NIGSYKENAY DSTSLELLTL VSTLVSNYLE RQHLLEQAQI
GVKQYKTYSK QLESLNHVAE ELCAATNESE VFSIITRSAS HIISAQRISY CVPNYKDKCF
EIRSVFSENE VMKSATVDME NSALQFVLQS GSPQFFENLA VTNFTDHLIL SKNGLCSGWS
VPVRVKGEIV GLLNAASNVK INERAQQLGV IKMLSGIMGV TLSRVNLQEQ LEHQACYDTL
TGLPNRHQFN QRMELAITQD NPIPFTLLFI DLDRFKVVND TMGHDVGDEL LCRVTQRINQ
QIRKEDFAAR HGGDEFVVLL LNKQSKAIAD ITSARIIKAL KEPFQIDEHS IFIGASIGIS
YFPEHSKNSE ELLKYADIAM YHAKKQGKSS FKLYSSRLSD KIHCRQKLET LLRLAVKNEE
LHLVFQPQIN EDGVFAIEAL LRWEDPELGV ISADEFIPIA EESLLIEEIT HWVINQSLQM
IARLRLICPS VYVAVNISAK NCLYPEKLKH CILTGLNDAN LPGSALELEV TENVFLQNVH
NTNKLFKDLG HYGIRFAIDD FGTGYSSLTY LLNLPLNTLK IDRSFIQDIH CNKIKLGVVK
GILVIAKSLS MNCLAEGVEI EAQKQCLEEL GCNRFQGYYF SKPLREKDFL LYLKSDLLQK
S
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