| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1138 |
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| Symbol | |
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| ID | 3521539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1159702 |
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| End bp | 1161615 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637283602 |
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| Product | GGDEF/EAL domain-containing protein |
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| Protein accession | YP_267881 |
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| Protein GI | 71281070 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCGTG ATGCTGCGGC ATTGTTATAT GGCAATGCAG TTTCCGGTAT TGTGATCTCT
TTGATTACTT CTAGTTTTCT AGTCTTCATG TTCAGTAACC CATTAACCGA CTCTTTTAAA
CACATGTGGT GGTGGGGGAT GAGCATATTG CTTGTGCTCA GAATGGTTGA TGTCATTATC
TGGAAAACTA AACTGCAGCA CACTGATTTT GATGGAGAAA AAGCGGTTAA GCGTTATATT
ACCGGTGTGA ATCCTACAGC AATTATGTGG GCTATCTACT TAGTTTATAT CACGAAATAC
AATAGCTCTG TCGAATTAAC TACAACGCTT ATAGCCATAG CTGCTATGGC TGGTGGTTCA
GCTACGATAC TTGCGGCTCA TAAATACACC GCAATGTTTT ATGCATTCAT ACTACTTTCT
CCTGCCTCGA TAGGCTTACT CTTATCCGAT CAACATGCAT TACAATTACT GGGTTTTTTG
GGAGTTTCCT ACAGTATCGT AATGCTTATT ACTTCAAAGA AATCGGCAGA TTTCACGCGA
AATACCTTGT TTTTAAAAAA TGAAAATAAG GTGTTAGTTC ATCAAATGGA AGAAAAAGTT
GAGCAGCGAA CGAGAAAAAT TTATGAACTC TCTAATCTTG ATTCACTCAC TGGATTATAT
AACCGAACCG CCTTTTTAAA ACATTTAAAG ACTGCGTTAG CTTCATCCAA TAAACCTTTT
GCACTGTTAT TTATCGACTT AGACGGCTTT AAAAAAATAA ATGATTCAAT TGGTCATCAA
GCTGGGGATC AAATTTTAAA AAAATCTGCT GAGCGTCTTA AACAGTGGTC TTTTGATACC
AAGCTATTGT GTCGCTGGGG TGGTGATGAG TTTTTGATGG TACTAGCAGA TACTGATGAA
GTCAGCGCTG TTGGTGTATC TAAGCAACTG ATAGAGGTAC TATCTGCCCC TCATAATACT
GAACATAGCG TTTTATCTGT CGGTGCAACT ATAGGTATTG CATTATATCC TGAGCACGCA
AAAACAGAAG ATCGTCTTAT TCAATCTGCC GATATGGCCA TGTACTATCA GAAAAAACAA
GCGCGTTCGA CTGTTGGCGT ATTCTCCAAA CAAATGGATA AACTTTATTC TTATGAACTT
CGTCTGAAAA ATGAACTGAC TCAATCGATT GAGAAAGAAC AATTAAGACT CGTTTTTCAA
CCGATAATAT CATCTAAAAA TGATGAAGTT GTTGCTTTTG AAGCGCTGCT TCGTTGGCAA
CTCGATGAGG AAAATATCCC TCCGGATGAT TTTATTAGTA TTGCTGAGCA ATACGGTTTA
ATACACAAAA TCGGTGCGTG GGTACTAAGA AATGCATGTT TGCAAGCCAG CCAATGGAGT
TCGGAACAAC CGCTGTCAGT TTGTGTAAAT GTTTCCGTGA TTCAGCTACA AGATGAGAAT
TTTATAGCTA TTGTTGATGA TGCACTTTCA AACAGTACAT TGCCTGGCGA TTTGTTGCAT
ATAGAAATAA CCGAGTCGGT ATTTGCTGCT GATACTAGTA TCATATCAAA CCAAATAAAA
CGACTTCAAG CTCGAAAAAT TAAGGTTTCT ATTGATGATT TTGGTACCGG ATATTCTTCT
CTTTCGGTTA TCCAAGACTT AGCGATCAAC ATGGTTAAAA TTGATCGTTC ATTTGTGAAT
AAAATGAATA CCAATGGTCA TGCGATTATC TCAGCAGTAA TGCATATCGC CTCATCGTTA
GATTTCTTGG TTATTGCTGA AGGTGTGGAG ACTGAAGCGC AAGCACGGGA ATTACAGAAG
TTAGGTGTGC ATTTCCTTCA AGGCTATCAT TATTCTAAGC CTATCGAAAT TGAAGATATA
GACAGTTATT TAACTAACAT GACACTGGAT AAGCAGTATT TACTTAACAA GTAA
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| Protein sequence | MQRDAAALLY GNAVSGIVIS LITSSFLVFM FSNPLTDSFK HMWWWGMSIL LVLRMVDVII
WKTKLQHTDF DGEKAVKRYI TGVNPTAIMW AIYLVYITKY NSSVELTTTL IAIAAMAGGS
ATILAAHKYT AMFYAFILLS PASIGLLLSD QHALQLLGFL GVSYSIVMLI TSKKSADFTR
NTLFLKNENK VLVHQMEEKV EQRTRKIYEL SNLDSLTGLY NRTAFLKHLK TALASSNKPF
ALLFIDLDGF KKINDSIGHQ AGDQILKKSA ERLKQWSFDT KLLCRWGGDE FLMVLADTDE
VSAVGVSKQL IEVLSAPHNT EHSVLSVGAT IGIALYPEHA KTEDRLIQSA DMAMYYQKKQ
ARSTVGVFSK QMDKLYSYEL RLKNELTQSI EKEQLRLVFQ PIISSKNDEV VAFEALLRWQ
LDEENIPPDD FISIAEQYGL IHKIGAWVLR NACLQASQWS SEQPLSVCVN VSVIQLQDEN
FIAIVDDALS NSTLPGDLLH IEITESVFAA DTSIISNQIK RLQARKIKVS IDDFGTGYSS
LSVIQDLAIN MVKIDRSFVN KMNTNGHAII SAVMHIASSL DFLVIAEGVE TEAQARELQK
LGVHFLQGYH YSKPIEIEDI DSYLTNMTLD KQYLLNK
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