| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1111 |
|---|
| Symbol | prfC |
|---|
| ID | 3521880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 1135852 |
|---|
| End bp | 1137432 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283575 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_267855 |
|---|
| Protein GI | 71281408 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTAC AGCAACAGCA AGTCGATTTA CGTCGCACCT TTGCCATAAT TTCTCACCCT
GATGCGGGTA AAACCACCAT CACCGAAAAA GTACTTTTGT TTGGTCAAGC CTTACAAAGA
GCCGGTACGG TAAAAGGTAA AAAATCAGGT CAACACGCGA AATCTGACTG GATGGAAATG
GAAAAAGAGC GTGGTATCTC AATTACTACC TCGGTAATGC AATTTCCTTA CAATGACTGT
TTAGTAAACT TACTTGATAC CCCTGGTCAT GAAGATTTCT CGGAAGATAC CTACCGTACG
CTTACTGCGG TTGATTCATG TTTGATGGTA ATTGACGTTG CTAAAGGTGT TGAAGCACGT
ACCGTTAAAT TAATGGAAGT TACTCGTCTT CGCGATACGC CAATTATTAC CTTCATGAAC
AAAATGGACC GCGATGTACG TGATCCAATG GAAGTCATGG ATGAAGTTGA AGAAGTATTA
AAAATCAAGT GTGCTGCTAT TACCTGGCCA ATAGGCATGG GTAAAGAATT TAAAGGCATT
TATCATATTC TTGATGACGA AATTACTTTG TATCAATCTG GCCTAGGCCA CATGATTCAA
GAAAAGCGTG TTATTAAAGG TCTTAATAAC CCCGAACTTG ATAAAATAAT TGGTAACTAT
GCTGATGATT TACGAGAAGA ATTAGAGCTT GTTTCCGGCG CGTCTCATGA CTTTAATTTA
GAAGAGTTCT TAAAAGGTGA ATTAACGCCA GTATTTTTCG GTACTGCATT AGGAAACTTT
GGTGTAGATC ATATGCTTGA TGGTCTGACT AAATGGGCAC CTAAGCCACT ACCTCGCAAA
ACAGATTTAC GTGAAGTGAC TGCTGAAGAA GAAAAATTTT CTGGTTTTGT CTTTAAAATT
CAAGCCAATA TGGATCCAAA ACATCGTGAC CGTATCGCCT TCATGCGTAT TTGCTCTGGT
AAGTATGAGA AAGGCATGAA AATGAAACAA GTTCGTCTTG CTAAAGATGT AAAAATTGCC
GATGCGGTAA CCTTTATGGC TGGTGATCGT TCAAACGTTG AAGAAGCCTT TGCTGGCGAT
ATTATTGGTT TACACAACCA CGGTAGTATT CAAATAGGTG ATACTTTCAC TGCCGGTGAA
ATGATGAAGT TTAGCGGCAT TCCTAACTTC GCACCGGAAA TGTTCCGTCG TATTCGCCTT
CGTGATCCAT TGAAAGCTAA GCAGCTACAG AAAGGTTTGA TTCAGTTATC TGAAGAAGGT
GCTGTACAAG TATTTAGACC TTTCATTAAC AACGATATGA TTGTTGGTGC TGTTGGTGTA
TTGCAGTTTG AAGTTGTTGT GCAGCGATTA AAAACTGAAT ACAAAGTTGA TGCAATTTAC
GAAGCTATTA GTGTTGCTAC CGCGCGTTGG TGTACTTGTG ATGATGAACG TACTTTAGAG
CAATTTAAAA AGAAATCGGG TGATTACTTA GCCTTAGATG GTGGTAATAA CTTAACCTAT
ATCGCACCAA CGATGGTTAA CTTATCGCTA GCACAAGAGC GAAATCCTGA TATCGTGTTC
CACTCGACTC GTGAACACTA G
|
|---|
| Protein sequence | MSVQQQQVDL RRTFAIISHP DAGKTTITEK VLLFGQALQR AGTVKGKKSG QHAKSDWMEM
EKERGISITT SVMQFPYNDC LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDVAKGVEAR
TVKLMEVTRL RDTPIITFMN KMDRDVRDPM EVMDEVEEVL KIKCAAITWP IGMGKEFKGI
YHILDDEITL YQSGLGHMIQ EKRVIKGLNN PELDKIIGNY ADDLREELEL VSGASHDFNL
EEFLKGELTP VFFGTALGNF GVDHMLDGLT KWAPKPLPRK TDLREVTAEE EKFSGFVFKI
QANMDPKHRD RIAFMRICSG KYEKGMKMKQ VRLAKDVKIA DAVTFMAGDR SNVEEAFAGD
IIGLHNHGSI QIGDTFTAGE MMKFSGIPNF APEMFRRIRL RDPLKAKQLQ KGLIQLSEEG
AVQVFRPFIN NDMIVGAVGV LQFEVVVQRL KTEYKVDAIY EAISVATARW CTCDDERTLE
QFKKKSGDYL ALDGGNNLTY IAPTMVNLSL AQERNPDIVF HSTREH
|
|---|
| |