| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1100 |
|---|
| Symbol | metA |
|---|
| ID | 3522343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1118313 |
|---|
| End bp | 1119260 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637283564 |
|---|
| Product | homoserine O-succinyltransferase |
|---|
| Protein accession | YP_267844 |
|---|
| Protein GI | 71281871 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1897] Homoserine trans-succinylase |
|---|
| TIGRFAM ID | [TIGR01001] homoserine O-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.237834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATTA AAATTCCCGA CCAATTACCA GCGTTATCAA TTTTAGATAA TGAAAATATT
TTTGTTATGT CTGAGAACCG AGCAGCATCT CAAGAAATTC GTCCAATGCA AGTCGCTATT
CTCAACTTAA TGCCGAATAA AATTGAAACT GAAGTGCAGA TATTGCGCAT GCTGTCTAAT
ACACCGTTAC AGATAAATAT TGAATTTATT CGTATACATA AAAATGTGTC CAAAAATACG
CCAGAAGAGC ATCTAGAAAA CTTTTACCAT TTGTTTGATG ATATAAAACA CAAACAATAC
GATGGTCTAA TCATCACAGG TGCTCCGCTA GCTTTGCTTG ATTATTCGCA AGTGAAATTT
TGGGATAAAA TTTGTGAAGT GTTTGATTGG GCAGAAAAAA ATGTAACTTC AACCATGTTC
TCATGTTGGG CTGCACACGC TGCGTTATAT CATCACTACG GTTTAAACCG TCATTTGCGC
AAAGAAAAAC TTTCTGGTGT GTTTAAACAC AAACCGCTTG ATGATAAAGA GTCATTAACG
AGAGGATTTG ATGAAAACTT TAATGTGCCA CATTCTCGTT ATGGTTACAT TGATAAATCA
GATTATGAAA GCATTCCTCA AATACAGATA TTAGCTGAAT CTGCTGATGC AGGTGTATAT
TTAGCTGCCA GTAAAAACAA ACAGCAAGTG TATTTGACGG GTCATCCTGA ATACGATGCA
AGCACATTGC ATGAAGAATA TTTACGAGAT AGTAATAAAA GTGCTGATAC TGCTTTACCC
AAAAATTATT ATCAAGATGA TGACGCCAGC AAATCACCCG TTGGCTCATG GCGTAGTCAT
GGTAGTTTGC TCTATACTAA TTGGCTTAAC TACTATGTTT ATCAAATGAC GCCATATCAA
TTAGATGCTT CAAATATTAG AGCTATTCAC CCTGATACTG TTATTTAG
|
|---|
| Protein sequence | MPIKIPDQLP ALSILDNENI FVMSENRAAS QEIRPMQVAI LNLMPNKIET EVQILRMLSN
TPLQINIEFI RIHKNVSKNT PEEHLENFYH LFDDIKHKQY DGLIITGAPL ALLDYSQVKF
WDKICEVFDW AEKNVTSTMF SCWAAHAALY HHYGLNRHLR KEKLSGVFKH KPLDDKESLT
RGFDENFNVP HSRYGYIDKS DYESIPQIQI LAESADAGVY LAASKNKQQV YLTGHPEYDA
STLHEEYLRD SNKSADTALP KNYYQDDDAS KSPVGSWRSH GSLLYTNWLN YYVYQMTPYQ
LDASNIRAIH PDTVI
|
|---|
| |