Gene CPS_1088 details

Gene Information

• Locus tag: CPS_1088
• Symbol: dxs
• ID: 3522683
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 1107564
• End bp: 1109456
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637283552
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_267832
• Protein GI: 71282210
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTACAA ACCTTGCTGA CTACCCATTA CTTTCTCAGA TTAATATTCC AGAGGATCTG 
CGCAATATGC CGCAGGAACA ACTGACACGT ATTAGTAATG AATTACGTAG TTTTTTACTT 
AATTCAGTAA GTAAAAGTAG TGGACACTTT GCATCAGGCT TGGGCACAAT TGAGCTTACT 
GTAGCCTTAC ATTACGTATA CAATACCCCG TTTGATCACT TGATTTGGGA TGTTGGTCAT 
CAAGCATATC CGCATAAAAT TTTAACTGGC AGACGTGATC AGCTACACAC TATAAGACAA 
AAAGGTGGTT TACATCCTTT CCCTTGGCGT GAAGAAAGCG AATACGATAC CTTAAGTGTT 
GGTCATTCAA GCACCTCAAT TTCTGCCGCT TTAGGTTTAG CTGTAGCCGC CGAAAAAGAA 
GCAAAAAACC GTAAAACAGT TGCTGTCATT GGCGATGGAG CTATGACTGC TGGTATGGCT 
TTTGAAGCAT TAAATCACGC AGGTGATATC AAAAAAGATA TGTTAATCAT CTTAAATGAT 
AATGACATGT CGATTTCAAA GAATGTTGGC GCCTTAAATA ACCATTTAGC CAAATTGCTA 
TCAGGCAGTA TTTTTACTGG TTTTAGAGAA AGCAGTAAAA AATTATTAGG CAATATTCCA 
CCAATAAAAG AACTTGCTAG TCGTGCTGAG GAGCATTTAA AAGGCATGGT CGTGCCAAGT 
ACTTTTTTTG AAGAGTTAGG ATTCAATTAT ATTGGTCCTA TTGATGGCCA TGATGTTGAA 
AGCTTAGTCA CTACAATTAA AAACATGCGC AACCTAAAAG GGCCGCAGTT TTTGCATGTT 
GTTACGACCA AAGGTAAAGG TTATCAAGCA GCAGAGCAAG ATCCGATAAA ATATCATGCT 
GTACCAAAGT TTAATCCTGA AGAGACCAAC TTACCCCAGT CAAAACCCAG TTTGCCTACT 
TATTCAAAAA TTTTTGGCGA TTGGTTATGT AAAACCGCTG AAATTGATAA AAAGTTAGTC 
GCTGTAACTC CTGCCATGGC TGAAGGCTCT GGTATGGTTG AATTTAGCCA ACGTTTTCCA 
GATCAATACT ATGATGTGGC AATTGCTGAA CAGCACTCAG TAACCTATGC TGCAGGTCTT 
GCCATTGGTG GTCTAAAGCC GGTAGTAGCA ATTTATTCTA GTTTTTTACA ACGTGGTTAT 
GATCAATTCA TTCACGATGT AGCCATACAA AACTTACCTG TCATGTTTGC TATTGACCGT 
GCGGGTATAG TAGGCGCTGA TGGGGCTACC CATCAAGGCG TTTTCGACTT AAGTTTTTTA 
CGTTGTATCC CTAATACCGT TATCATGGCA CCGTCTAATG AACGAGAATG TCAGTTAATG 
TTAAACACTG GTTACAAGTT AGATGGCCCT AGCGTTGTTC GCTACCCTCG TGGCAATGGT 
ACCGGCGAAA TACTCCCTAG TGTTGATGAA ACCATTGAAC TAGGTAAAGG TGTGACCATC 
CTTACAGCCA CAGTTATAGA AAGCCAAGAG CAAACAAACA AAAGCATAGC CATATTAAGT 
TTTGGCTCTA TGCTAGGTGA AGCAAAAAAA GCGGCTTTAG AACTTAATGC AACGCTAGTA 
GATATGCGCT TTGTTAAACC ACTTGATGAA ACACTTATTG ATACGTTAAA TGCCAAACAT 
GACTGCCTGG TAACGGTTGA AGATAATGCT ATAGCTGGCG GTGCTGGCTC AGGCGTAAAT 
GAATATTTAC TTGCCCAAGG TAAACCAGTT ACTATTCTAA ATATTGGTGT TACTGACCAT 
TTTGTTAAAC ATGGCACTCA AGAAGAAATG CATCATGAAT TAGAGTTAGA TGCCGAAGGT 
ATTGTCATTA AAATAAAACG CTTTATTAAC TAA 

 

Protein sequence

MITNLADYPL LSQINIPEDL RNMPQEQLTR ISNELRSFLL NSVSKSSGHF ASGLGTIELT 
VALHYVYNTP FDHLIWDVGH QAYPHKILTG RRDQLHTIRQ KGGLHPFPWR EESEYDTLSV 
GHSSTSISAA LGLAVAAEKE AKNRKTVAVI GDGAMTAGMA FEALNHAGDI KKDMLIILND 
NDMSISKNVG ALNNHLAKLL SGSIFTGFRE SSKKLLGNIP PIKELASRAE EHLKGMVVPS 
TFFEELGFNY IGPIDGHDVE SLVTTIKNMR NLKGPQFLHV VTTKGKGYQA AEQDPIKYHA 
VPKFNPEETN LPQSKPSLPT YSKIFGDWLC KTAEIDKKLV AVTPAMAEGS GMVEFSQRFP 
DQYYDVAIAE QHSVTYAAGL AIGGLKPVVA IYSSFLQRGY DQFIHDVAIQ NLPVMFAIDR 
AGIVGADGAT HQGVFDLSFL RCIPNTVIMA PSNERECQLM LNTGYKLDGP SVVRYPRGNG 
TGEILPSVDE TIELGKGVTI LTATVIESQE QTNKSIAILS FGSMLGEAKK AALELNATLV 
DMRFVKPLDE TLIDTLNAKH DCLVTVEDNA IAGGAGSGVN EYLLAQGKPV TILNIGVTDH 
FVKHGTQEEM HHELELDAEG IVIKIKRFIN