| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1035 |
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| Symbol | ccmF |
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| ID | 3520994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1060926 |
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| End bp | 1062965 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637283500 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_267784 |
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| Protein GI | 71280528 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAGC TTATACCTGA ACTCGGTCAC TTAGCCCTTA TAATTGCTTT AGCATTTGCT
ATTTGCTTAA CTTTAATTCC GTTAATCGGT GTTCATAGTC CGGAGCAGAG TTCATTAAAG
AAACTCATGA CCTATGCTAG ACCACTTGCT TACGGTATGT TTTTTTTCAC TGGTATTAGT
CTTGTCATTC TTGCCTATAG TTTTGTCGTT GATGATTTTT CTATTAAGTA CATCGCCGGT
CACTCAAATA CCCATTTACC TTATTATTTT AAAATAAGCG CCGTTTGGGG CGGTCATGAA
GGCTCATTAT TGTTGTGGGT GTTCTCATTA ACTGCATGGA CTGCCGCCGT TGCGCGTTTT
TCAAAAGGTA TTGAAGAAGA GTTTATTTCC CGTGTTTTAG CTGTCATGGG CATGATTGCT
ATCGGATTTA TCGCTTTTAC TTTATTAACC TCCAATCCAT TTGACCGTTT ATGGCCGAAT
GTGCCGATGG AAGGTCGTGA TTTAAACCCA TTATTACAAG ATATTGGCTT AATTATTCAT
CCACCATTGT TATATCTTGG TTATGTTGGT TTTGCTGTTG CTTTTGCGTT TGCTGTTGCT
GCTTTAATGG CGGGTAAAAT GGATGCAGCA TGGGCTCGCT GGTCTCGTCC TTGGACTGTC
GGCGCGTGGG TGTGTTTAAC ATTAGGTATC GCGCTAGGTA GCTGGTGGGC ATATTATGAA
CTTGGCTGGG GCGGTTGGTG GTTCTGGGAT CCTGTTGAAA ATGCATCATT TATGCCTTGG
CTGGTCGGTA CTGCTCTGAT CCATTCTTTA GCGGTTACAG AAAAACGTGG CACTTTTAGA
AACTGGACTA TTTTACTGGC AATATTTGCT TTTGGTTTAA GTTTATTAGG TACCTTCTTA
GTACGTTCTG GGGTGATTAC TTCGGTACAT TCTTTCGCTG CTGATCCTTC TCGCGGTATC
TTTATACTTG TGATTCTTGC TATTGCTATA GGCGGCTCTT TAACGTTATA CGCCTTTAGA
GCGAGTACTG TGGCGAGCTT TTCTCGCTTC GCATTTTATT CACGTGAAAC GGCACTATTA
TTGTGTAACG TTATTTTAGT TGTTGCAGCG GTAACCGTTC TTTTAGGCAC TCTATATCCA
TTATTAGTTG ATGCGTTAGG TTACGGGAAA ATATCAGTGG GTCCTCCGTA TTTTAATGCC
GTTTTTGTTC CTATCATGAG TATTCTATTT ATCATTATGG GAATAGGGCC TTTGATTCGT
TGGAAAAAAG CGAAACAAGG CGAGTTACGT AAAAGACTTT TAAGTTCATC GGTATTTAGT
ATTGCTTTTG GTTTATTGTT TCCTGTGATT TATGGTGGCG AGTTCAATGC TTTGGTTGCT
ATGGGTATTA CGTTAGCGAC TTGGGTTTTC TTAGTGGTTG TTAAAGAAGT TAAAAATCAA
TTTCAAACAG TAGGAAAATT AACGACAAGC CATATAGGCA TGGCCACAGC TCATGCTGGT
ATTGCTATCA CTATTGTTGG CGTTACCATC GTTTCAATGT ATGAAAGCGA AACCAATGTA
AAAATGGCGT TAAACGAAAG AGTAACTATT TCAGGTTACC AAATTGAGTT TAAAGGCATT
AAACATGTTG AAGGCCCTAA TTACAGTGCC GAGCAAGGAC AAATTAATAT CTATAAAGTT
ACTGGCCCGA ACGAAAGTGA ATTCGTTAGT TTACTCAAAC CGGAACGTCG CACTTACCGT
GTACAAACGA TGGGAATGAC TGAAGCCGGA ATTGATCCTG GTTTGTTCCG TGACGTATAT
GTCGCTTTAG GTGATCCATT ACCCGGTGGT GCGTGGGCAA TTCGAGTACA TTATAAACCA
TTTGTTCGTT GGATCTGGTT AGGTGCAATT TTCATGGGCG CAGGTGGTAT TTTATCAATG
CTTGATAAAC GCTATCGCCG TAAAAAAACT GTAGTTGTTA AGTCACCAGT TGTTGCTGAC
TCGTTGACAA ACACAGTGGC TGCAACGCCA ACGAATACGC CAAAAGTATC GGAGATATAG
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| Protein sequence | MPELIPELGH LALIIALAFA ICLTLIPLIG VHSPEQSSLK KLMTYARPLA YGMFFFTGIS
LVILAYSFVV DDFSIKYIAG HSNTHLPYYF KISAVWGGHE GSLLLWVFSL TAWTAAVARF
SKGIEEEFIS RVLAVMGMIA IGFIAFTLLT SNPFDRLWPN VPMEGRDLNP LLQDIGLIIH
PPLLYLGYVG FAVAFAFAVA ALMAGKMDAA WARWSRPWTV GAWVCLTLGI ALGSWWAYYE
LGWGGWWFWD PVENASFMPW LVGTALIHSL AVTEKRGTFR NWTILLAIFA FGLSLLGTFL
VRSGVITSVH SFAADPSRGI FILVILAIAI GGSLTLYAFR ASTVASFSRF AFYSRETALL
LCNVILVVAA VTVLLGTLYP LLVDALGYGK ISVGPPYFNA VFVPIMSILF IIMGIGPLIR
WKKAKQGELR KRLLSSSVFS IAFGLLFPVI YGGEFNALVA MGITLATWVF LVVVKEVKNQ
FQTVGKLTTS HIGMATAHAG IAITIVGVTI VSMYESETNV KMALNERVTI SGYQIEFKGI
KHVEGPNYSA EQGQINIYKV TGPNESEFVS LLKPERRTYR VQTMGMTEAG IDPGLFRDVY
VALGDPLPGG AWAIRVHYKP FVRWIWLGAI FMGAGGILSM LDKRYRRKKT VVVKSPVVAD
SLTNTVAATP TNTPKVSEI
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