Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0996 |
Symbol | |
ID | 3521917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1013833 |
End bp | 1016829 |
Gene Length | 2997 bp |
Protein Length | 998 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637283461 |
Product | alpha amylase family protein |
Protein accession | YP_267745 |
Protein GI | 71281445 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
TIGRFAM ID | [TIGR02103] alpha-1,6-glucosidases, pullulanase-type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.621113 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACAC CTTCTTTCTT TCACTCTATT TCAAGCCTTA ACCGTGCAGT TTATATTGCG CTTTCTGCCA GTTTATTAGT TAGTGCTTGT GGGGAAACAA GTAAATCGAC TCAATCTTCT CAGTTAGATA ATCAAGGCGT TGATATCGCG GCCAAAAGCA AAACTATTAC GGCAAGTGCC TTTAAAGTAA GCGACTTAGA TAACTTACCT AGTGATAGCT CGGCTCATTG GTTAAGCACC AATATATTGG TACTGCCCAA ATCAGTTAAT AAATTTCAAT ACCAACTATT AAGCAAAAAT TCAGTCGGTT TTAGTAGCAT TGATTTAATG CCCGTTAATT TTCCTGAAAA ACTGGCTACA AAGTTTCCAC ATTTAGCTGA CTTTCAAGCA TTTGAACTGC AATTAACACC AGATCAAAGC AAGCGTTGGT TAAAACAACA AGTTATGGTG GTTGCCATCG ATGCGACTAT TGATACAACC GTTGAACCTG CCCTTAAAAC AAGTAAGCAA GCCAAAGAAG TTGCTTATGT GCAAATCGGC GGCGTTATTG ATGCACTTTA TACTCAGGGC AAAAATGACG CTGATGAAGT GACTGATTTA GGCGCAACAA TTATTAGCAA CCAAGAAGTC GAGGGTGTCA GCACTGCTGT TAGTTTTAAG TTATGGGCAC CAACAGCACA AGCTGTTTCT ATACAGCTTT TTGATGATAA CTTACAAGCT CTGTCAGATG GTAAGCTTGA GATGGTAGAA GATAGCAGTA CGGGAGTTTG GCAGGTATTG TCAGATAGCC AAGCGAGTTA CGCTTATTAT AAGTATCAAG TTAATGTTTA TCATCCTGCA TCAAAAAAAA TTGAATCCTT ATCCGTTACT GACCCCTATT CCTTAAGCTT GTCTGTTAAT AGTGAGTATT CACAGGTTGT TGATTTAAAT GACGCCGTTA CTCAACCAAA AGACTGGCTT ACTCAGCAAA TACCTACCGT GAAAAATGTC GAAGATAATG TTTTTTATGA AACCCATATC CGTGACTTTA GTGCTAACGA ACAGCAACTT AGTGACTCTG GCTTTAAAGG CAAATACAAA GCCTTTAGCG AGAAAAACTC TGATGGCATT CAACATTTAA AAGCGCTGCA AATTGCAGGA TTAAATAACA TTCATTTATT ACCTACTTTT GATATAGCGA CGGTCAATGA AGATGACAGT AAACACCTTG ATATAGATGA TAGTTTGGGT AAAGTTTGTG CCATTACAAA AAATATCAGC CTATGTCAGC AACCTTACGA TGAAAAACAG TCAATAAAGT CATTATTACA GAGCTATGAG GTTGCAGGAG AGCAAACACA GCAATTGGTG AGCGAGTTAC GTGAAGTCGA TAACTACAAT TGGGGTTACG ATCCTTTTCA TTATACTGTG CCAGAAGGTA GTTATGCTGT TGATGCTAAA GGTGTATCAC GCTTAGTTGA ATTTAGAGAA ATGGTTCAAA GCCTACATGC TATGGGTTTC AGGGTGATTA TGGATGTAGT TTATAACCAC ACTCACCAAG CAGGATTAGA GCCTAATTCA GTATTAGATA AAATTGTGCC CACCTATTAC CACCGTCTGG ATCCATTAAC TGGGGACATT GAGCAATCGA CTTGTTGTGA TAATACCGCG ACAGAGCGTG TAATGATGGC AAAACTAATG ACAGATTCAT TAGTTGTCTG GGCTCGTGAT TATAAAATTG ATGGTTTTCG CTTCGATTTA ATGGGACATC AGCCAAAAGA TGCAATGTTG ACTGCCAGAG AAGCAGTGCG CCTAGTAGAC AATGATACTT ACTTTTACGG TGAAGGCTGG AACTTTGGTG AAGTAGCGAG TAATAGTCAA TTTATTCAAG CCAGTCAGTT AGAACTAGGT GGTAGCGAAA TAGGGACTTT TTCAGATAGA TTGCGTGATG CTGTTCGTGG TGGCGGCAAT AATACCCGAG ACTCCCAGGG CGTAGGTAAT GGTCTGTTAA CCTTTCCCAA TAATAAACAG CCAAATGAAA GCCAAGACCA AACAATGATT CAGGCTGACT ATGCCTTACG TATGGACCAG TTGCGAATTG GCTTAGCAGG GAATTTAATT AACTTTCCTT TAAGAACTCT CAAAGGTGAA AGTAATGGCG AAAAAGTATT AGGCAAAGAT ATCCCTTATG GCGATCAGCC AACAGGTTAT GCCTTAGATC CCGCAGATAC CATCAACTAT GTTTCCAAGC ATGATAATCA AACACTTTGG GATAACAGCC AATACCGCTT ACCATTTGAT GTGTCAACAG AAGATAGAGT GAGAATGCAT CTACAAAGTT TGTCTTTCGC TTTATTCGCT CAAGGTATCC CTTTTATTCA CATGGGCTCA GAGTTTATGC GCTCTAAGTC ATTTCTTAGA GACAGTTATG ACTATGGTGA CTGGTTCAAT CGAGTTGATT TTTCCAAGCA GGATAACTTC TACAATGTTG GGCTACCACC AGCTGAAAAA GATAAAGACA ACTGGCCGTT AATAAAAGAA GTACTTGCCG GGCACCAAGG TCGTGATCAG GTCAACGCTG AGCAAATTCA GCGAAGCAGT AATGCATTTA TCGATATGTT GGCAATTCGT ATGAGTAGTC CATTATTTAG GTTGACCACC GAACAGAGCA TTATTGATAA AGTAAGTTTT CTTAATGCTG GGGCATTAAA GCAAGGCGGC AGTATCTCAG CGCAGCAAAC TGGCTTATTA GTGATGAAAA TCGATGATAC GCAAGGTGAA GCTGTAGACA GTAAATATCA AAGTTTACTG GTTATCTTTA ATATCAGTGA TAAAACACAG ACATTTAACT ATAACTTTAA AGAGGACTTT GATTCTACTA GCACTCACGG ATATCAATTA CACCCGATCC AGAAAAGGGG AAGTGATGAA GTGGTTAAAC AAAGTAAAGT AACGGTAAAA GGTTTTATTG TTCCGCCATT ATCCAGCGTA GTATTTGTAA AACCTGACAG TAAATAA
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Protein sequence | MKTPSFFHSI SSLNRAVYIA LSASLLVSAC GETSKSTQSS QLDNQGVDIA AKSKTITASA FKVSDLDNLP SDSSAHWLST NILVLPKSVN KFQYQLLSKN SVGFSSIDLM PVNFPEKLAT KFPHLADFQA FELQLTPDQS KRWLKQQVMV VAIDATIDTT VEPALKTSKQ AKEVAYVQIG GVIDALYTQG KNDADEVTDL GATIISNQEV EGVSTAVSFK LWAPTAQAVS IQLFDDNLQA LSDGKLEMVE DSSTGVWQVL SDSQASYAYY KYQVNVYHPA SKKIESLSVT DPYSLSLSVN SEYSQVVDLN DAVTQPKDWL TQQIPTVKNV EDNVFYETHI RDFSANEQQL SDSGFKGKYK AFSEKNSDGI QHLKALQIAG LNNIHLLPTF DIATVNEDDS KHLDIDDSLG KVCAITKNIS LCQQPYDEKQ SIKSLLQSYE VAGEQTQQLV SELREVDNYN WGYDPFHYTV PEGSYAVDAK GVSRLVEFRE MVQSLHAMGF RVIMDVVYNH THQAGLEPNS VLDKIVPTYY HRLDPLTGDI EQSTCCDNTA TERVMMAKLM TDSLVVWARD YKIDGFRFDL MGHQPKDAML TAREAVRLVD NDTYFYGEGW NFGEVASNSQ FIQASQLELG GSEIGTFSDR LRDAVRGGGN NTRDSQGVGN GLLTFPNNKQ PNESQDQTMI QADYALRMDQ LRIGLAGNLI NFPLRTLKGE SNGEKVLGKD IPYGDQPTGY ALDPADTINY VSKHDNQTLW DNSQYRLPFD VSTEDRVRMH LQSLSFALFA QGIPFIHMGS EFMRSKSFLR DSYDYGDWFN RVDFSKQDNF YNVGLPPAEK DKDNWPLIKE VLAGHQGRDQ VNAEQIQRSS NAFIDMLAIR MSSPLFRLTT EQSIIDKVSF LNAGALKQGG SISAQQTGLL VMKIDDTQGE AVDSKYQSLL VIFNISDKTQ TFNYNFKEDF DSTSTHGYQL HPIQKRGSDE VVKQSKVTVK GFIVPPLSSV VFVKPDSK
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