Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0980 |
Symbol | |
ID | 3523000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 986971 |
End bp | 989340 |
Gene Length | 2370 bp |
Protein Length | 789 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637283445 |
Product | glycosy hydrolase family protein |
Protein accession | YP_267729 |
Protein GI | 71282525 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1554] Trehalose and maltose hydrolases (possible phosphorylases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.966041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAACTT TAAACAACTA CCTAGCTATA GATGAAGATA AACAGTGGAT TTTATCGCAA GATCAGTTAA CACACCTTTC AGAGGGTGTT ATTGAAACAT TATTTTCATT AGGTAATGGT ACTTTAGGTA CGCGTGGCAC TAGCGGTTAT GAAAGTGACA TCACCCAACC TGAGTGTGAA GGCACTTATA TCAATGGGTC TTATATCAGA GAGACGATTG AATATGATGA ATCAGCTTAT GGCTTTGCAC AATTTAATAA TAAAATGATG CAAGCATTTA ATACCAAAGC TATTGAAATA TCATCAGAAA ATGAAGTTTT CAAACCTCAT AGCATTGGCA AAAGACATGT AAACTTGCAC CAAGCGTCTT ATCATGAGGT ATTACAACTT CACTCAGATT CAGGTAAAGA AATTAAGCTG CATATCACTC GATTTGTATG TCAACATCAA CAAAATATGA TGATAAATCA CTACCAAATA GAGGCGGTAA ATTTTTCAGG TAAATTACAA ATAACGTCTT CGATTAGAGG AAGTGATTCG ACAAGTCAAA ATAGCAATGA CCCTAGAATA GGCAATTTAT CAATGATTGA TAAACTACAC TGTTTAGAGT CATTATCTAC ACCCGAATAT GCCTTTCTAT TACATCAACT ATCAGATCCA AAAAGTTTGA TGATTGCTGC AACAAGTCAC CAGTTTGAGC AAAAAAATAA GCATATTAAG ATCAGTTCAA ACAGTAAAAA TGTATTAACT GAACAATTTG AAGTAGAACT TACTGACAAT AAAGTTACCT TCAGTAAATA CAGCTTATAT TTATGCCCTC AAACGTTAAC AAGTAATAAT CAACAACAAA ACGCACCAGT AGATGAGCAA GCATTAATCA CTCAAGCTCG TGAAGAGCTC TTATGTGCTA AAAACCTTGG TTATCAAGAG AACTTACAAT TACATCAACA ATTGATGAAT GATTTTTGGC AAGATAGTGA TGTAATCATT GAAGGGCATG ACCAACATCA ATTAGCTATC AGATTGAATA TGCTGCATTT AACTATGTCA GCAGGAAAAG ATGGTCAAAG AAATATAGCC GCCAAAGGTT TAACTGGCCC TGGTTACGAC GGGCATTACT TTTGGGACTC AGAGATCTAT ATTATCCCCT ACTTCATTTA CACTCAGCCT GATGTAGCAA AAAGCCTATT AAGTTATCGC TTTAACAGTT TAGCAAAAGC TAAGAGTCGT GCAACAGAAA TGGGCCATGA ACAAGGCGCC TTATTTCCTT GGCGTACTAT CAGTGGTGAA GAATGTTCAT CCTTTTTTCC AGCAGGAACA GCGCAATACC ATATCAATGC AGCAATTGCC TACGCAGTGA GACAATATTT TAAAGCAAGT GATGACTGGC AGTTCATTTG GGATGAAGGT GCTGAACTTG TTATTGAAAC CGCACGATTA TGGCCCTCAT TAGGGCATTT CAACAAAAAT AACAGTAATC GTTTTTGCAT TGATACTGTT ACTGGACCAG ATGAATATAC CGCATTGGTT AATAACAATT ATTACACTAA CTCAATGGCA AAAATTCACT TATCCTTTGC TATTGAGCTG ATAAATAAAT TAAGCGTTAA CAATGAAATC CGATGTAACC TGCTGCTAAC TAAGCTAAAT CTTTCCATTG AAGAGCTGAA TATTTGGAAA GAAATTGCTG AGAGAATGTA CCTTCCACAT CAAGCGGAGC AAAACATTAG CCCGCAGGAT GACAGTTTTT TAGATAAAAA ACCTTGGGAC TTTATCGGTA CGCCCAAAGA TAAATACCCA CTGTTATTAA ACTTTCATCC ACTGGTAATT TATCGTCACC AAGTTTTAAA ACAAGCTGAT GTGATCCTTG CCAACTTTTT GCAAGATGAT GAAGTAGATA TCCGTTTAAA GCGAAATAAT TTGGCTTTTT ACGAACCGAT AACAACTCAT GATTCAACCT TATCAGCCTG TACCCATAGC TTAGCTTACA GTGAAACAGG CAATCATCAG GCCGCCTTTG ATTACTTTGA TGACACAGTG TTAACGGATT TAAATAATCT ACACAACAAT AGCCATTATG GTGTGCATAC AGCCGCTATG TCTGGTTCTT GGATGTGTAT TACACAGGGT TTTGCTGGCT TACGTATTAG AGATAATTAC GCGAGTTTTC AGCCTAATTT ACCAAAGCAG TGGCAAGGTT TACGTTTTAA ATTGAAGCTA TTGGGTTGCC AAGTTGAATT AACATTATCT CGTGGACAAA TAACTTACCA GCTATTGTCT GGTAAACAGT TCTCTTTAAA ACATTACCAA CAAGATTATT TACTCACAGA ACTAGAGCCA ACCTTGCATA TTGCAATTGA TGAAGATTAA
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Protein sequence | MKTLNNYLAI DEDKQWILSQ DQLTHLSEGV IETLFSLGNG TLGTRGTSGY ESDITQPECE GTYINGSYIR ETIEYDESAY GFAQFNNKMM QAFNTKAIEI SSENEVFKPH SIGKRHVNLH QASYHEVLQL HSDSGKEIKL HITRFVCQHQ QNMMINHYQI EAVNFSGKLQ ITSSIRGSDS TSQNSNDPRI GNLSMIDKLH CLESLSTPEY AFLLHQLSDP KSLMIAATSH QFEQKNKHIK ISSNSKNVLT EQFEVELTDN KVTFSKYSLY LCPQTLTSNN QQQNAPVDEQ ALITQAREEL LCAKNLGYQE NLQLHQQLMN DFWQDSDVII EGHDQHQLAI RLNMLHLTMS AGKDGQRNIA AKGLTGPGYD GHYFWDSEIY IIPYFIYTQP DVAKSLLSYR FNSLAKAKSR ATEMGHEQGA LFPWRTISGE ECSSFFPAGT AQYHINAAIA YAVRQYFKAS DDWQFIWDEG AELVIETARL WPSLGHFNKN NSNRFCIDTV TGPDEYTALV NNNYYTNSMA KIHLSFAIEL INKLSVNNEI RCNLLLTKLN LSIEELNIWK EIAERMYLPH QAEQNISPQD DSFLDKKPWD FIGTPKDKYP LLLNFHPLVI YRHQVLKQAD VILANFLQDD EVDIRLKRNN LAFYEPITTH DSTLSACTHS LAYSETGNHQ AAFDYFDDTV LTDLNNLHNN SHYGVHTAAM SGSWMCITQG FAGLRIRDNY ASFQPNLPKQ WQGLRFKLKL LGCQVELTLS RGQITYQLLS GKQFSLKHYQ QDYLLTELEP TLHIAIDED
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