| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0952 |
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| Symbol | |
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| ID | 3519457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 958529 |
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| End bp | 960994 |
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| Gene Length | 2466 bp |
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| Protein Length | 821 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637283417 |
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| Product | GGDEF/EAL domain-containing protein |
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| Protein accession | YP_267701 |
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| Protein GI | 71279060 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.461336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATAA AATTTGTTGG TGTACCAACC AAGCTTTTGG TACTAATAGT CTCAACCTTA
CTGCTTTTAG CGGTAGGGTT TTCTTCGTTA TCCTATTGGC GTTTACAAGC CGATTATCAA
GAATTTCAGC AAAATAATAT TGTCCAAGGT CAAGTGCAAG TTAATCTGCA CAATAGTATT
TTGCGCACCA AAATTACCGT TTGGTTAGAG TCCTTCACCG ACTTGATTCA ATTATCACAG
CAAGATGATT TTTCTAACCT AGCCTTGCAG TTAGAGAAGC AATATGACGC TCTACAGTTA
CACCTTAACG TTGAAGATAT CTGGTTAGTT GATGAGAAAC AAAATATTTT ATTTGCTACC
AATGACTTCC CAGCAGTAGT GCAAGATAAC ATTGCACAAG TCTTTAGATT ACAAGAACCA
GAACATCGAA TATATTGCCC ACAAAGCTGT CAATTGTTAT TGAGTTTACC TTTACTCAAT
AAGCAAGGTG ATATGGTGGT TGTTACCATG AGTACTTCAT TGGTTGATAT GCTGTTTGCT
TTGAAAACCA CTTTAGATAG AGATGTTGCT GTAATTCGGA TACCCGCTAA TGGTGAAATT
AACTCGTCCT CAGCTAAAGT GATTTCGGCA TCTAATATGC GACTAACAGA GTCCTTATTA
GCGATGAATA AACCTGATTC AGCACTTAAT CAAGTATTAG CGCAGGGGTT ACACTTAGAT
TTAGAAAAAA ATAGCTACCT GATAAACCTA TTAACTTTAT CAGAGCAAGA CAAACAAGGT
TTTTATCTCG CTTTAATTGA TGATGTGACA GCTTATAAAG CAAAGAATGA TGCATACCAA
AAGCGCTTTA TATTATCTTT GAGTCTTATT TTTAGTTTAC TAGCGGCATT TGTTTACTTT
ATTTCTAGTC CCTTTACTAA ACGATTATTG CTGTTATCTA ATGCGCTTCC GTTATTAGCA
CAGAAAAAGT TTGATCAGTT TAGACAAGTT GACCTAAAAA GACCTCGAAT GTTTGCGGAT
GAATTAGATG TATTAGCTCA TTCATCTGAA GAGCTGAGCT TTGAATTAGA ACAACTCAAC
TTAGTGGTAG AGCAAAAAAC TAAAGAGTTA GAAAATATAG CGATGTATGA TTTGCTAACG
GGTTTGCCTA ATCGTAATAT GCTTAATTAT CAATTGCGTA AGTCATTAGC AAATATTGCT
CGCCATAAAA GTGGTGTTGC TGTGCTGTTT CTCGATTTAG ATGACTTTAA AAAGGTTAAT
GACAGTAATG GTCATAATAT TGGTGATAAG TTACTTATTC AAGCTGCTGA GCGTGTGCGG
GTTAGTGTTG GTGAACTAGA TTTAGCGAGT CGTTTTGGCG GTGATGAATT TGTTATTGTG
CTTAGCCACC TTAACAGTGT CGATGATGCT ATTGAAGTAG CGGAGAAGGT ACTGTTACAG
TTTAAAGAGT CGATAAAACT TGGCTCTAAT ATATTTTATG TTTCAACGAG TATTGGTATT
GCTTATACAG AATCAGCGAC AGAAAAGTCG GATGATTTGA TCAGCCATGC TGATATCGCC
ATGTATGAAG CAAAAGATAA TGGCGGTGGT CAGTATCACA TCTATCACCA AGAAATGTTT
CAACGTGTCG CTCATAGGGT GATGCTTGAA GGTGAAGTCA GACAAGCGTT AGCTAAACAG
CAGTTTAGTC TAAGTCTACA ACCGCAGATA TGTGCAAAAA CTAAAAAGCT ATATGGTTTT
GAAGCACTAT TACGCTGGCA ACACCCTGAA CGCGGAATGA TCTCGCCAGA GGACTTTATT
CCTATTTTAG AAAACTCTCA ACATATGATC GAATTAGGTT ATTGGATTAT TCGCCGATGC
TTTGAGTTAG TAATAAGTAT CAAAGAATAC GGCCTAGAAA ACATACGTAT TGCGATTAAT
TTATCTGCGG GACAGTTTAT GGATGCTAAT TTACCGCATT TCCTAAATGA TTTATTGGTC
GAATTCTCAT TAACAGCGAA AAATTTTGAA CTAGAGCTTA CTGAGCAAAC GTTAGTGAAA
GATATGGATC ATACCATTGC GATGATGGAG TCCTTGAAAG TTATTGGCTT TAGTTTTGCT
ATTGATGATT TTGGTACGGG TTATTCATCG TTAGCGTATT TAAAGAAAAT GCCTGTTGAT
GTTATTAAAA TAGATAAGAG TTTTATTTTT GGCATGTTAG AAAATCATTC TGACTTTCAA
ATTATTACTT CGACTATCGC AATGGTTAAA AACTTAGGTT TGACGGTAGT AGCAGAAGGG
GTAGAAACAC AAGCGCAATT ACGTAGCTTA ACTGAAAATG ATTGCGATAT TATTCAAGGC
TATTATTATT CTAAGCCTAT TCCAGAAAAA GACTTGTTTA CTATGCTAGA CAAGCAAACA
ACAAAAGGCT ATTGGAAAGT AGCCAAGAAA ATTGAGCCAG ATTTATCAAC AGGTAAGTCT
GCTTGA
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| Protein sequence | MNIKFVGVPT KLLVLIVSTL LLLAVGFSSL SYWRLQADYQ EFQQNNIVQG QVQVNLHNSI
LRTKITVWLE SFTDLIQLSQ QDDFSNLALQ LEKQYDALQL HLNVEDIWLV DEKQNILFAT
NDFPAVVQDN IAQVFRLQEP EHRIYCPQSC QLLLSLPLLN KQGDMVVVTM STSLVDMLFA
LKTTLDRDVA VIRIPANGEI NSSSAKVISA SNMRLTESLL AMNKPDSALN QVLAQGLHLD
LEKNSYLINL LTLSEQDKQG FYLALIDDVT AYKAKNDAYQ KRFILSLSLI FSLLAAFVYF
ISSPFTKRLL LLSNALPLLA QKKFDQFRQV DLKRPRMFAD ELDVLAHSSE ELSFELEQLN
LVVEQKTKEL ENIAMYDLLT GLPNRNMLNY QLRKSLANIA RHKSGVAVLF LDLDDFKKVN
DSNGHNIGDK LLIQAAERVR VSVGELDLAS RFGGDEFVIV LSHLNSVDDA IEVAEKVLLQ
FKESIKLGSN IFYVSTSIGI AYTESATEKS DDLISHADIA MYEAKDNGGG QYHIYHQEMF
QRVAHRVMLE GEVRQALAKQ QFSLSLQPQI CAKTKKLYGF EALLRWQHPE RGMISPEDFI
PILENSQHMI ELGYWIIRRC FELVISIKEY GLENIRIAIN LSAGQFMDAN LPHFLNDLLV
EFSLTAKNFE LELTEQTLVK DMDHTIAMME SLKVIGFSFA IDDFGTGYSS LAYLKKMPVD
VIKIDKSFIF GMLENHSDFQ IITSTIAMVK NLGLTVVAEG VETQAQLRSL TENDCDIIQG
YYYSKPIPEK DLFTMLDKQT TKGYWKVAKK IEPDLSTGKS A
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