| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0917 |
|---|
| Symbol | |
|---|
| ID | 3521649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 920056 |
|---|
| End bp | 921951 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637283382 |
|---|
| Product | acid-CoA ligase family protein |
|---|
| Protein accession | YP_267666 |
|---|
| Protein GI | 71281178 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA TTGAACAACA AGAATTAGCA ATCAATTCAC CCGAGAGTTA CTGGAAAGAG
CAGTCTGAAC TAGTTGCTTG GTACAAAAAA CCTCAAACGA TATTGTCGAC AAACACTGAT
TCTTGGCATG ATTGGTTTGC CGATGGCGAA TTGAACTCTT GCTATCTTGC GTTGGATTAT
CATGTTGAAC AAGGCCGAGG TGCTCAAACT GCACTGATAT ATGACTCGCC GGTTACCGGA
AAAAAACAAA AATTTAGTTA TCTTGAACTG ACCAGTCTAG TGGCAAAATT TGCTGATGTA
CTCAGATCAC AGGATGTTAC TAAAGGCGAT CGTGTATTAA TTTATATGCC AATGATCCCA
CAAGCCGCTA TAGCAATGCT GGCATGTGCT CGATTAGGTG CAATTCATTC CGTCGTTTTT
GGTGGTTTTG CTGCCAATGA ACTTGCAGTA CGTATCAATG ATGCTGAGCC AAAAGTTATT
GTTGGTGCTA GCTGTGGTGT TGAAATAGCC AAAGTTATTC CTTATAAACC ATTAATTGAT
CAAGCTATCG AAATCGCTAA TCATAAGCCA AAAAATTGCA TCATTTACCA AAGAGAAGAA
GTTCAAGCAC AGTTAGTACC GAACAGAGAT CTTGACTGGC AGGAACAAAT GGATGTTGCT
GTTGAAATTC CTGCTGTACC CGTTAAAAGC ACCGACCCAC TCTATATTTT GTATACCTCA
GGTACCACAG GCAAACCAAA AGGTGTGGTA AGAGATAATG GCGGTCATGC TGTCGCAATG
CTTTATAGCA TGAAAAACAT CTATGGCATG CAGAAAGGGG ATACCTTCTG GGCTGCCTCG
GACGTTGGTT GGGTTGTGGG TCATTCTTAC ATTATTTACG GTACTTTAAT GGCAGGCTGT
ACCACGATTG TTTATGAAGG AAAGCCGATT AGAACACCTG ATGCTGGTGC TTTTTGGCGT
GTTTGTGCTG AGTATAAAGT TAACGCTTTA TTTTCAGCAC CTACCGCCTT TCGTGCTATC
GGAAAAGAAG ATCCAGAAGG TGACTTATTA AAAGATTACG ACCTCTCATC ATTGAAACGT
TTATTCCTCG CAGGAGAACG CTTAGATCCA GCAACCTATC ATTGGCTTAA AGAAAAAACA
CAACTACCAG TAATAGATCA TTGGTGGCAA ACAGAAACAG GCTGGGCAAT TGCCAGCACG
CCATTAGATG ACGGCTCTGA CAATATAGTA GCAACAAAAG CTGGCTCTGC TGGTTTTCCA
ATCGCAGGAT TTGATGTACA AATTCTTGAT GGCGATGGTC AGCAAGTCCC TGCTGGACAG
CAAGGTAGTG TCGCCATAAA ACTACCACTT CCTCCTGGCT GTTTAGCCAC TATATATCGC
GATTCTGAGC GTTTAGTATC AGGGTATTTA TCAAATCATC CTGGCTATTA TACGTCGGGA
GACGGTGGCT ATATTGATGA AGAAGGTTAT CTTTTCATCA TGGGTCGCAT TGATGATGTT
ATCAATGTTG CTGGGCATCG TTTATCAACC GGTGAGATGG AAGAGGTTTT ATCGGGTCAT
CCAGCGGTAG CAGAATGTGC TGTTGTCGGC ATTCACGATG CACTAAAAGG GCAAGTACCT
CTTGGGTTAG TCGTCATAAA AAATGGTATT ACCACCAGTG ATGAAGATCT CATTAGCGAA
TTAAAACAAA GCATTCGTAA TGATATTGGC GCAATAGCAT CATTGAAAAA ACTACTGATC
ATTGATAGAT TGCCAAAAAC GCGTTCTGGC AAAATTTTAC GTAAAACCCT TAGACAAATG
ATTGATGGGC AAGAAATTGA AATACCTTCA ACCATAGAAG ATAGCCAAGT AATAACTGAA
CTTTCAGGTG CTCTAGTGGG CATCAACAAA GACTAG
|
|---|
| Protein sequence | MKHIEQQELA INSPESYWKE QSELVAWYKK PQTILSTNTD SWHDWFADGE LNSCYLALDY
HVEQGRGAQT ALIYDSPVTG KKQKFSYLEL TSLVAKFADV LRSQDVTKGD RVLIYMPMIP
QAAIAMLACA RLGAIHSVVF GGFAANELAV RINDAEPKVI VGASCGVEIA KVIPYKPLID
QAIEIANHKP KNCIIYQREE VQAQLVPNRD LDWQEQMDVA VEIPAVPVKS TDPLYILYTS
GTTGKPKGVV RDNGGHAVAM LYSMKNIYGM QKGDTFWAAS DVGWVVGHSY IIYGTLMAGC
TTIVYEGKPI RTPDAGAFWR VCAEYKVNAL FSAPTAFRAI GKEDPEGDLL KDYDLSSLKR
LFLAGERLDP ATYHWLKEKT QLPVIDHWWQ TETGWAIAST PLDDGSDNIV ATKAGSAGFP
IAGFDVQILD GDGQQVPAGQ QGSVAIKLPL PPGCLATIYR DSERLVSGYL SNHPGYYTSG
DGGYIDEEGY LFIMGRIDDV INVAGHRLST GEMEEVLSGH PAVAECAVVG IHDALKGQVP
LGLVVIKNGI TTSDEDLISE LKQSIRNDIG AIASLKKLLI IDRLPKTRSG KILRKTLRQM
IDGQEIEIPS TIEDSQVITE LSGALVGINK D
|
|---|
| |