| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0872 |
|---|
| Symbol | rplD |
|---|
| ID | 3518520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 882255 |
|---|
| End bp | 882860 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637283337 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_267621 |
|---|
| Protein GI | 71278848 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.299152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAT CATTAAAAGA CGCATCTGGT GCTCTTGAAG TATCTGAAGC AACTTTTGGA
CGTGAGTTTA ATGAAGCGTT AGTACACCAA GTAGTAGTTG CATATGCAGC TGGTGCTCGT
CAAGGTACTC GTGCTCAGAA AACTCGTTCA GAAGTTAGCG GCGGTGGTGC AAAACCATGG
CGTCAAAAAG GTACTGGCCG TGCACGTGCT GGTACTACCC GTGGTCCAAT CTGGCGTACA
GGTGGCGTAA CATTCGCTGC TAAACCTCAG GATCACAGCC AAAAAGTTAA CCGTAAAATG
TATCGTGGTG CTATTGCTAG CATCCTATCT GAACTAGTTC GTCAAGAACG TCTAGTTGTG
GTAGAGAACT TTTCGGTAGA AACACCTAAA ACTAAAGAAT TAGTTGCTAA GCTTAAAGGC
TTAGAGCTTA AAGACGTATT GATTGTAACG AAAGAAGTTG ACGAGAACTT GTTCTTATCA
GCACGCAACT TATATAAAGT TGACGTTCGT GATGTTGCAG CAATTGACCC TGTAAGCTTA
GTTGGTTTCG AAAAAGTTTT AATCACTGCT GATGCAGTTA AAGAAATTGA GGGGATTTTA
GCATGA
|
|---|
| Protein sequence | MELSLKDASG ALEVSEATFG REFNEALVHQ VVVAYAAGAR QGTRAQKTRS EVSGGGAKPW
RQKGTGRARA GTTRGPIWRT GGVTFAAKPQ DHSQKVNRKM YRGAIASILS ELVRQERLVV
VENFSVETPK TKELVAKLKG LELKDVLIVT KEVDENLFLS ARNLYKVDVR DVAAIDPVSL
VGFEKVLITA DAVKEIEGIL A
|
|---|
| |