| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0859 |
|---|
| Symbol | pqqC |
|---|
| ID | 3523114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 875002 |
|---|
| End bp | 875757 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637283324 |
|---|
| Product | pyrroloquinoline quinone biosynthesis protein PqqC |
|---|
| Protein accession | YP_267608 |
|---|
| Protein GI | 71282639 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG5424] Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C |
|---|
| TIGRFAM ID | [TIGR02111] coenzyme PQQ biosynthesis protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAC CATGGACAAG AGAGCAGTTT GAAGAAATGC TCCGCGCTAA AGGGCAGCTT
TACCATATTC ATCACCCATT TCATATTGCC ATGCACCAAG GTGAATGTAG TGTTGAGCAA
ATTCAGGGTT GGGTGGCAAA CCGTTTTTAT TACCAAGTAA ATATTCCTAT TAAAGATGCC
GCCATATTAG CTAATTGTCA TGATATGGAA ACTCGTCGTC TATGGATCCA ACGCATATTA
GATCACGATG GCAGTGTAGA AGACAAAACC TTAGGTGGTA TTGAAGCCTG GTTACAATTG
GGCCAAGCGG TAGGATTAGA TAGACAAGAC TTACTGGATG AGAAATTTGT TTTACCTGGG
GTGCGATTCG CCGTAGATGC CTATGTAAAC TTTGCTCGCC GTGCTAACTG GCAGCAAGCT
GCATGTTCGT CACTGACGGA AATGTTTGCC CCTCAAATAC ATCAAAGCAG GCTAGACAGT
TGGCCTATAA ATTATCCTTG GATTGAAACA CAAGGCTTAC AGTATTTTCA AATGCGCTTA
TCTCAAGCAA GACGCGATGT TAATCATGGC CTACAAATCA CCTTAGATCA CTTTACTACT
CGTCAAGCAC AAGACGAGGC ATTAAATATT CTCCAATTTA AATTAGATAT TTTGTGGAGT
ATGCTTGATG CTATGACCTT AGCATATCAA CAGGACCGAG CGCCTTACCA AGGTTTAATA
GCTGAGCCAA ATTACCATAA GAGAATTTTT AAATGA
|
|---|
| Protein sequence | MQQPWTREQF EEMLRAKGQL YHIHHPFHIA MHQGECSVEQ IQGWVANRFY YQVNIPIKDA
AILANCHDME TRRLWIQRIL DHDGSVEDKT LGGIEAWLQL GQAVGLDRQD LLDEKFVLPG
VRFAVDAYVN FARRANWQQA ACSSLTEMFA PQIHQSRLDS WPINYPWIET QGLQYFQMRL
SQARRDVNHG LQITLDHFTT RQAQDEALNI LQFKLDILWS MLDAMTLAYQ QDRAPYQGLI
AEPNYHKRIF K
|
|---|
| |