| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0781 |
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| Symbol | |
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| ID | 3519632 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 800061 |
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| End bp | 802835 |
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| Gene Length | 2775 bp |
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| Protein Length | 924 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637283246 |
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| Product | TPR domain-containing protein |
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| Protein accession | YP_267530 |
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| Protein GI | 71278148 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.55707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAGCTT ATCCGTATAT ATTTTTACTA CTCATTTCCT CTTCGTTAGC TGCCTCACAG
GAAGATAAAC TTTATGAAGC AGCTCGTAGT GCATTAAACG ACAACAAATA TAGTGAAGCA
CTGATACACG TAAAAAATAT ACTAAAAATA TCACCAGAGC ACTTAGCCTC AAATATTTTA
ATAGCTGAAA TATTGCTCGC AGACGGTAGT GCTAGTGCGG CAGAAGCATC ATTAACTAAA
GCTGTTTCTC TAGGTGCAAA TAAGAAGCAG TTACGACTAT TGTTTGCAGA ATCCTACATT
ATGCAAGGGC AATATAATAA AACCTTGGAT TACCTACCAG AGCAAACTAA TGACGACAAA
TTAGCAGCGA AAATTTATGT ACTTCGTGGT GATGCGCATT TGGGGCTACG ACAATTAAAG
CTATCACAAA ATGATTACAA CACAGCGTTA GCTTTTGATG CCAAAAACAT AGATGCCAAG
TTGGGATTAG CGCAAATTGC AGTTAATTAT TTTCAATTCC ATCAGGCAGA AAAACTCGTT
GATGAGGTGT TATCTGGGTA TATTCCCCCC ATTAAAGCTT GGAATTTGAA AGCGAGTATT
CAGCAAAGTT TAGGCAATAA CGAACTTGCT CTTAATGCAA TTAACCAAGC GCTGCTGATT
GATAAAAACA ATATTCAATC ACTAATTTTT GCAAGTACTA TAAACATCGA ATTACAGCAG
TTTGAGTTAG CAGAAAAATA CGCCGATACC GTATTAGAGC AAGTGCCGAA TGAACCTAAA
GCTGAATTTA TTAAAGCTAT GGTACAGGTT AGGAAAAATG AAAATGCTGG CTTTGAAAGT
GCAATAGAAA CAGTTGCACA AGTACTGGAT CACCTGAGTG AAGATGTGTT GCGGTCAAAT
CCTTCTTATT ATTATTTAGC CAGTATTATT TTATTTCACC AACAAAAACA TGAAGCAGCA
AGACAATATA TAGATGACTA TTTATTGATA GATGAAAATA ATATAAACGC TTTAACACTT
GCTGCCACTA TTGAATTAGT AGAAAAAAAA CCAATGCAAG CTAAAACGTT GTTAAGTAGA
GCTAATTTTT TAGACCCTGA TAACCCGAAA ATATTATCTA TGCTAGGCAT GACCTACTTA
GAGCTAAGGC AGTATGAAAA AGCTCACTTC TACCTTGCAA AAGTTAAAGA GCTGAAGCCT
AATTTAGGAA TCGCAGACAC TCAACTTGCA CAAAGCTATT TAGCAACAGG AAAGCCCGAA
AAAGCGATTA AGCATTTGTT AACAGCCTCT GCAGCAGAAT ATGATCCAAC AGTGGTTGGT
TTATTATTGG TTGAGTCTTA TATTAAGTCT GGAAAAATGA ATAAAGGCAT TAGTGTTGCA
AAAAACTTAG CTGAAAACAT GCCAGACAAT GCAAATATTC AGCATCATCT TGGTTATATT
TACCAAATTT CAGGTGAAAT AGAGAAGGCA AAACATCAAT TTGAACAAGC ATTGATAATT
GAACCCAATC ATGCCAAATC CATTATTAGC TTAGCTAACC TCGATTATCA AAAGGGTAAC
GCTGATATTG CTATTGATCG TTTAAAAGCA GCATTAATAA TCTCAGCAAA CGATATTGAT
TTAATTACAG CTTTAGCTAA GTTTTATAAC CGTACTAATA ATTCAGCTGC TAGCGTCATC
TTACTAGAAG AACCATTTAA GCTTGATAAT CAAAATGAAG AATTATTAAA AAACTTAATT
GTTAGTTATG TTGGCGATAA ACAGCTGATG CTTGCTATTG AAACATTGAA TACTTATTTA
TTGAATCAAA GAAAAACAGT TGAGCTTTAT CTCATGCTGG CAAGTTTACA AATAATGAAT
TCAGATGTGA ACTCTGCAGT TAGTGCGTAT AAATCGGCGA TAAAACAAGA CGGAGATAAA
GGGACAATTT ATTTGTTAAT AGCCCATGCT TATCAACGAT TTTCTAAAGT ACCTGAGGCA
ATCACTGCCT ATAAAAAATC GATGGCTTGG GATGGAGATA ACGATAAAGC GATCATAGGA
TTAGCGCAAC TTTATAATGC AGAAAATGAT ACTGACAGTG CAATAAAATT AATTAAATCG
TTTGAAGTTA ATCATCAGTT ATCTGCCCAA TTAGTCGAAG TTTTAGCTAA TTCCTATTTA
CGTATAAATC AATATAAACT AGCTGAAATG TATTATAAAA AACGTATTAA ATTAGCTAGT
AATGACAGTA GCGTAGTTGG TTTAAACTTA ATATACAGAG CGACTAAACG AACCAGTAAA
GCAGTAGACT TATTAACAAC GTCGTTAAAT GACAGGCCAA ACAGTTTATT CTTGAATACA
GCATTAGCTG AGCTTTATAT CGACCAATCT CAATGGCTCA ATGCAGATAA GATATATCAA
ACATTAGTTC AGCTGTACCC TAAGCAACCG GCAATATTAA ATAATGCCAG TTATGTGGCT
TTGAATCTAT CTGATTACCC ACGAGCTGAA GCATTGGTAA AAAGGTCATT GGCACTTGTT
GATAATCAGC CTGACTCTTT AGACACTTTA GGCTGGGTTT ATTATCACAC CAAAGAATTT
AATAAAGCCT TACCTCTATT TAGAAAAGCG TTAGCCATCA ATAATTCAAA TCCGGCGGTG
AAGTATCATT TAGCGTTAAC ACTCAAAGCT CTTAATAGAG ATAAAGAGGC AATAAAATTA
ATGGTAGATG TAGTGAATTC AGATTATTCC CAAAAAGCTG ATGCGGATGT CTTATTGAAG
CAATGGTTAA AATAA
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| Protein sequence | MKAYPYIFLL LISSSLAASQ EDKLYEAARS ALNDNKYSEA LIHVKNILKI SPEHLASNIL
IAEILLADGS ASAAEASLTK AVSLGANKKQ LRLLFAESYI MQGQYNKTLD YLPEQTNDDK
LAAKIYVLRG DAHLGLRQLK LSQNDYNTAL AFDAKNIDAK LGLAQIAVNY FQFHQAEKLV
DEVLSGYIPP IKAWNLKASI QQSLGNNELA LNAINQALLI DKNNIQSLIF ASTINIELQQ
FELAEKYADT VLEQVPNEPK AEFIKAMVQV RKNENAGFES AIETVAQVLD HLSEDVLRSN
PSYYYLASII LFHQQKHEAA RQYIDDYLLI DENNINALTL AATIELVEKK PMQAKTLLSR
ANFLDPDNPK ILSMLGMTYL ELRQYEKAHF YLAKVKELKP NLGIADTQLA QSYLATGKPE
KAIKHLLTAS AAEYDPTVVG LLLVESYIKS GKMNKGISVA KNLAENMPDN ANIQHHLGYI
YQISGEIEKA KHQFEQALII EPNHAKSIIS LANLDYQKGN ADIAIDRLKA ALIISANDID
LITALAKFYN RTNNSAASVI LLEEPFKLDN QNEELLKNLI VSYVGDKQLM LAIETLNTYL
LNQRKTVELY LMLASLQIMN SDVNSAVSAY KSAIKQDGDK GTIYLLIAHA YQRFSKVPEA
ITAYKKSMAW DGDNDKAIIG LAQLYNAEND TDSAIKLIKS FEVNHQLSAQ LVEVLANSYL
RINQYKLAEM YYKKRIKLAS NDSSVVGLNL IYRATKRTSK AVDLLTTSLN DRPNSLFLNT
ALAELYIDQS QWLNADKIYQ TLVQLYPKQP AILNNASYVA LNLSDYPRAE ALVKRSLALV
DNQPDSLDTL GWVYYHTKEF NKALPLFRKA LAINNSNPAV KYHLALTLKA LNRDKEAIKL
MVDVVNSDYS QKADADVLLK QWLK
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