| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0746 |
|---|
| Symbol | |
|---|
| ID | 3521190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 750096 |
|---|
| End bp | 751196 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637283211 |
|---|
| Product | AcrA/E family efflux transporter MFP subunit |
|---|
| Protein accession | YP_267496 |
|---|
| Protein GI | 71280721 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.339879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGC TCTCATTTAT ATTTATTGCT CTGATACTCG TTGGATGTAA TGAACCAGCT
AAAGAAATTA CTAAACCAAT ACGTCCCATC ATGTGGACCA AAGTAAAAAT ATCTCCGTTT
GAACAAATCC GTACCTTGTC TGGTATTGTT GCTCCTGTTG AAGCAACTAA ATTGAGCTTT
GAAGTTCAAG GAAAAATTCA AACCATTGAG GTGAATCTTG GTAATGAAGT TGTTAAAGGT
CAAGAGCTAG CGCGCTTAAA TCAACGTAAC TTTAACTTGG GGCTTCAGTC TGCACAAGCG
CAATACCAAC AAGCCAAAGC AACATTAATT GATGCCAGAA ATAGCCATAG ACGATACGAA
CAATTACTTA AACAAGGCGT AGTGTCACAA TCAGGCTTTG ATAATGCTAA GGCCACTTAT
GACGCTAGTA AAAGTGCTGC TGATGTAGCA CAAGCACAAT TGGATATAGC TAGTAAAAAT
TTGCAAGACA GTATTTTATT AGCCCCTTAT GACGGTATTA TCACCAAACG TTTATATGAA
CCTTCACAGC AAATATCCGC AGGACAATCC CTTTTTGAAA TTGAAGGTAA ACATGGCCTT
GAAGTTCATG TCATGGTACC AGAAACACTC ATTCGTGAAT TAAGACAGCT TTCTATTCTC
CCTATACATT TTCCTGTATT ACCTGAATTA ACGATGCAAG GTCAAATTAC CGAAATTGGT
ACTCGTGCTG AATATGCGAA TGCCTTCCCT GTTACAGCAG TACTCGAGGG TGATAATCCT
TTACTCCGTG CAGGTATGAC GGCTGAGGTG GACTTTTCTT TTTCTGGAAC AGGAAGAACA
GGTCATACAG GTGATGTATT TCGTATTCCG GCAACTGCGC TAAGTGCAGG GTTAGAACAA
AAGGCTTATG TTTTTGTTTA TAACCCTGAC AGCCAACAAG TGATTAAAAC CCAAGTGCAG
ACAGAAAACA TTTTCAAAAA TGAAGTGTTC ATTTCATCAG GTTTAAAACA AGGCGATATT
ATTGCGATAG CGGGTGTTGC CTTTTTGCGC GATGGCCAAC AGGTCAGTTT GACTGATAAT
AACGTTCAGC GTTTTAATTA A
|
|---|
| Protein sequence | MRALSFIFIA LILVGCNEPA KEITKPIRPI MWTKVKISPF EQIRTLSGIV APVEATKLSF
EVQGKIQTIE VNLGNEVVKG QELARLNQRN FNLGLQSAQA QYQQAKATLI DARNSHRRYE
QLLKQGVVSQ SGFDNAKATY DASKSAADVA QAQLDIASKN LQDSILLAPY DGIITKRLYE
PSQQISAGQS LFEIEGKHGL EVHVMVPETL IRELRQLSIL PIHFPVLPEL TMQGQITEIG
TRAEYANAFP VTAVLEGDNP LLRAGMTAEV DFSFSGTGRT GHTGDVFRIP ATALSAGLEQ
KAYVFVYNPD SQQVIKTQVQ TENIFKNEVF ISSGLKQGDI IAIAGVAFLR DGQQVSLTDN
NVQRFN
|
|---|
| |