Gene CPS_0730 details

Gene Information

• Locus tag: CPS_0730
• Symbol: ribD
• ID: 3522815
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 731492
• End bp: 732661
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637283195
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_267480
• Protein GI: 71282342
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.54496
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAGGG CTATAGATTT AGCTAAAAAA GGACATTTCA CTACTTCTCC CAACCCTAGA 
GTTGGTTGTG TGTTAGTGAG CTATAAAGAA GGTGTTGGTA AGGTCATTGG TGAAGGTTAT 
CATCAAAAAG CTGGGCAGGG TCATGCAGAA GTTAATGCGT TAGCTGAGGC AAAAGTGAAC 
AATCCCGCTT TAATCAAGGG GGCTACAGCC TATGTTACCC TTGAGCCTTG CAGCCATTTT 
GGCCGTACGC CGCCATGTGC CAAAGCATTA GTTGATGCTG GTGTTAGTCA TGTTATTGCC 
GCTATGGTTG ATCCCAATCC ACAAGTTTCT GGTAATGGTT TATCTCTATT AGAAAAAGCG 
GGCATCACGG TACAATCGGG TTTGTTAGAA CAAAGCGCAA GGCTACTCAA CGTCGGGTTT 
ATTCATAAGA TGGTCAATAA TCTTCCATAT GTACGCTGTA AATTAGCAGC GAGTCTTGAT 
GGAAAAACAG CCATGGCCAG TGGCGAAAGT AAATGGATTA CGTCAGCAGA TGCTCGACAA 
GATGTTCAAC GTCTACGCGC CCAGAGTTGC GCGATTATCA CAGGTGCAGA TTCAGTACTT 
TTTGATAATG CTAAGATGAC AGTACGTTGG TCTGAGCTAG GTGAGTTAAA AAGTAACTAC 
CCAAAAGAAG CCCTTCGTCA GCCTTTACGT ATTGTAATTG ATAGTCAAAA TAGACTGACG 
CCAAACCTTG CATTATTCGA ACATCAGTCA CCAATTTTAA TTATTAATGG CATAGATCCG 
GACTACGTTG AAAATAAAAT TGAATCACAT CTTGAAAACT TACCAAAATG GCCGCATTTC 
GTAGAACAGG TGCAATTACC TGTGACTGAA AACTCGCAGG GTAAATTGAA AATAAATTTA 
AAGGCTTTGT TAGAATACCT AGCAAAGCGA GGGCTCAATG ATATTTTAAT TGAGTCAGGC 
GCACGGTTAA GTGGTGCCTT TATTGAACAA AATTTAGTGA ATGAACTTAT TCTGTATCAA 
GCGCCCAAAT TAATGGGTGG CGATGGTAAA AACTTAATGG AAATGCCCTC AGTATCAAAG 
CTGAACCAAG CCAAGGCATT AACTATTAGT GATATTCGTA TGGTTGGTGT GGATATTCGC 
ATCACTAGCC AACTTACTAA TACTGAATAA 

 

Protein sequence

MSRAIDLAKK GHFTTSPNPR VGCVLVSYKE GVGKVIGEGY HQKAGQGHAE VNALAEAKVN 
NPALIKGATA YVTLEPCSHF GRTPPCAKAL VDAGVSHVIA AMVDPNPQVS GNGLSLLEKA 
GITVQSGLLE QSARLLNVGF IHKMVNNLPY VRCKLAASLD GKTAMASGES KWITSADARQ 
DVQRLRAQSC AIITGADSVL FDNAKMTVRW SELGELKSNY PKEALRQPLR IVIDSQNRLT 
PNLALFEHQS PILIINGIDP DYVENKIESH LENLPKWPHF VEQVQLPVTE NSQGKLKINL 
KALLEYLAKR GLNDILIESG ARLSGAFIEQ NLVNELILYQ APKLMGGDGK NLMEMPSVSK 
LNQAKALTIS DIRMVGVDIR ITSQLTNTE